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May 2025 Publications

June 2, 2025

Topological Photonics? Vanishing Drude Weight? Improving Tandem Fluency? A selection of recent publications featuring research using the MGHPCC.

Abouelkomsan, A. et al (2025), Compressible Quantum Liquid with Vanishing Drude Weight, Physical review Letters, doi: 10.1103/PhysRevLett.134.176501

Adkins, Jamie L. et al (2025), Immunogenetic diversity and transcriptomic response to fibropapillomatosis in Hawaiian green sea turtles, Endangered Species Research, doi: 10.3354/esr 

Barrazza-Alfaro, Marcelo et al (2025), exoALMA. XVI. Predicting Signatures of Large-scale Turbulence in Protoplanetary Disks, The Astrophysical Journal Letters, doi: 10.3847/2041-8213/adc42d

Boyer, Jarad et al (2025), Learning to Dissipate Energy in Oscillatory State-Space Models, arXiv: 2505.12171 [cs.LG]

Carrivale, Costanza et al (2025), Precise Standard-Model predictions for polarised Z-boson pair production and decay at the LHC, arXiv: 2505.09686 [hep-ph] 

Chiu, Wei-chi et al (2025), Strain-Induced Charge Density Waves with Emergent Topological States in Monolayer NbSe2, ACS Nano, doi: 10.1021/acsnano.4c13478 

Choi, Jason et al (2025), Resolving Conflicting Constraints in Multi-Agent Reinforcement Learning with Layered Safety, arXiv: 2505.02293 [cs.RO] 

España-Irla, Goretti et al (2025), Functional Connectivity Patterns Following Mild Traumatic Brain Injury and the Association With Longitudinal Cognitive Function, Human Brain Mapping, doi: 10.1002/hbm.70237 

Fromer, Jenna et al (2025), Batched Bayesian Optimization by Maximizing the Probability of Including the Optimum, Machine Learning and Deep Learning, doi: 10.1021/acs.jcim.5c00214 

Ghorashi, Ali et al (2025), Interpretable Artificial Intelligence for Topological Photonics, arXiv: 2505.10485 [physics.optics]  

Gomes, Luisa et al (2025), Solvent Dynamics in Gel Polymer Electrolytes for Lithium–Sulfur Batteries, ACS Nano, doi: 10.1021/acsnano.5c01797

HoKoo, Bon et al (2025), Improving Tandem Fluency Through Utilization of Deep Learning to Predict Human Motion in Exoskeleton, Actuators, doi: 10.3390/act14060260

Huang, Cheng-Hsin et al (2025), Designing Ultraporous Mesostructured Silica Nanoparticles for the Remediation of Per- and Polyfluoroalkyl Substances, ACS Nano, doi: 10.1021/acsnano.5c02008 

Kenia, R. et al. (2025), Topology-Preserving Deep Supervision for 3D Axon Centerline Segmentation Using Partially Annotated Data, 2025 IEEE 22nd International Symposium on Biomedical Imaging (ISBI), Houston, TX, USA, doi: 10.1109/ISBI60581.2025.10981036 

Le Roy, Emmie J. et al (2025), Impact of Climate Variability and Change on the Surface Ozone Response to NOx Emissions Reductions, Environmental Science and Technology, doi: 10.1021/acs.est.5c01347

Li, Dion et al (2025), Role of ion acoustic instability in magnetic reconnection, arXiv: 2505.08983  

Lokmanoglu, Ayse D. et al (2025), VisTopics: A Visual Semantic Unsupervised Approach to Topic Modeling of Video and Image Data, arXiv: 2505.14868 [cs.IR]  

Naidu, Rohan P. et al (2025), A Cosmic Miracle: A Remarkably Luminous Galaxy at zspec = 14.44 Confirmed with JWST, arXiv: 2505.11263 [astro-ph.GA] 

Narrett, Isaac S. et al (2025), Impact plasma amplification of the ancient lunar dynamo, Science, doi: 10.1126/sciadv.adr7401

Pantelopulos, George A. et al (2025), Kinetics and Mechanism of Phase Separation in Ternary Lipid Mixtures Containing APP C99: Atomistic vs Coarse-Grained MD Simulations, Journal of Chemical Theory and Computation, doi: 10.1021/acs.jctc.5c00016 

Peng, Shirui et al (2025), Capturing Multiscale Dynamics in the Oceanic Mixed Layer. Part I: Hydrostatic Simulations, Authorea, doi: 10.22541/au.174585712.26266872/v1 

Sakhya, Anup Pradham et al (2025), Complex electronic topography and magnetotransport in an in-plane ferromagnetic kagome metal, arXiv: 2505.09891 [cond-mat.mtrl-sci] 

Shin, Ethan Youngin and Michael F. Howland (2025), Accelerated Bayesian Calibration and Uncertainty Q​uantification ​of R​ans T​urbulence M​odel P​arameters for S​tratified A​tmospheric B​oundary L​ayer F​lows, arXiv: 2505.18756 [physics.flu-dyn] 

Sullivan, J.M. et al (2025), High-redshift Millennium and Astrid galaxies in effective field theory at the field level,  arXiv: 2505.03626 [astro-ph.CO] 

Uddin, Shiekh Zia et al (2025), AI-Driven Robotics for Free-Space Optics, arXiv: 2505.17985 [physics.optics] 

Volkov, Victor V. et al (2025), Red blood cell Raman microscopy: modelling sub-cellular biochemistry, Royal Soc Chemistry PCCP, doi: 10.1039/d5cp00172b

Wuitchik, D.M. et al (2025), Outside your shell: exploring genetic variation in two congeneric marine snails across a latitude and temperature gradient, BMC Genomics, doi: 10.1186/s12864-025-11603-z 

Yan, Xingchi et al (2025), Identifying intermolecular interactions in single-molecule localization microscopy, PNAS, doi: 10.1073/pnas.2409426122 

Zhang, Gemma et al (2025), Modeling Galaxy Surveys with Hybrid SBI, arXiv: 2505.13591 [astro-ph.CO] https://arxiv.org/pdf/2505.13591 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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