PUBLICATIONS

A selection of research using the Massachusetts Green High Performance Computing Center

Below is a selection of papers that appeared in 2019 reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s former Odyssey Cluster and new Cannon Cluster, Northeastern’s Discovery Cluster,the Boston University Shared Computing Cluster and MIT’s Engaging Cluster all of which are housed at the MGHPCC.

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact hlh@mit.edu

2020

João Alves, Catherine Zucker, Alyssa A. Goodman, Joshua S. Speagle, Stefan Meingast, Thomas Robitaille, Douglas P. Finkbeiner, Edward F. Schlafly and Gregory M. Green (2020), A Galactic-scale gas wave in the solar neighborhood, Nature, doi: 10.1038/s41586-019-1874-z

Erin Arai, Alexandre Tartakovsky, R. Glynn Holt, Sheryl Grace, Emily Ryan (2020), Comparison of Surface Tension Generation Methods in Smoothed Particle Hydrodynamics for Dynamic Systems, Computers and Fluids, doi: 10.1016/j.compfluid.2020.104540

Brian Arnold, Mashaal Sohail, Crista Wadsworth, Jukka Corander, William P Hanage, Shamil Sunyaev, Yonatan H Grad (2020), Fine-Scale Haplotype Structure Reveals Strong Signatures of Positive Selection in a Recombining Bacterial Pathogen, Molecular Biology and Evolution, doi: 10.1093/molbev/msz225

Mehraj R. Awal, Gregory S. Wirak, Christopher V. Gabel, Christopher W. Connor (2020), Collapse of Global Neuronal States in Caenorhabditis elegans under Isoflurane Anesthesia, Anesthesiology doi: 10.1097/ALN.0000000000003304

Caitlin M. Baker, Sarah L. Boyer, Gonzalo Giribet (2020), A well‐resolved transcriptomic phylogeny of the mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) reveals signatures of Gondwanan vicariance, Journal of Biogeography, doi: 10.1111/jbi.13828

Christopher C.M. Baker, Jessica A. Castillo Vardaro, Daniel F. Doak, Johan Pansu, Jérémy Puissant, Robert M. Pringle, Corina E. Tarnita (2020), Spatial patterning of soil microbial communities created by fungus‐farming termites, Molecular Ecology, doi: 10.1111/mec.15585

Tiffany Barnes, Jamie Payton, Nicki Washington, Felesia Stukes, Alan Peterfreund, Sarah Dunton (2020), Featured Research on Equity and Sustained Participation in Engineering, Computing, and Technology, Computing in Science and Engineering, doi: 10.1109/MCSE.2020.3010595

Mark Baum Robin Wordsworth (2020), Groundwater Flow to Gale Crater in an Episodically Warm Climate, Journal of Geophysical Research Planets, doi: 10.1029/2020JE006397

M.-A. C. Bind, and D. B. Rubin (2020), When possible, report a Fisher-exact P value and display its underlying null randomization distribution, PNAS, doi: 10.1073/pnas.1915454117

Bodhisatwa Biswas, Seung Gyou Baek, Paul T Bonoli, Syun’ichi Shiraiwa, Greg M Wallace and Anne E White (2020), Study of turbulence-induced refraction of Lower Hybrid waves using synthetic scrape-off layer filaments, Plasma Physics and Controlled Fusion, doi: 10.1088/1361-6587/abb0d5

Amir Bitran, William M. Jacobs, Xiadi Zhai, and Eugene Shakhnovich (2020), Cotranslational folding allows misfolding-prone proteins to circumvent deep kinetic traps, PNAS, doi: 10.1073/pnas.1913207117

Zhao Bowen, Takahashi Jun, Sandvik Anders W., (2020), Tunable deconfined quantum criticality and interplay of different valence-bond solid phases, Chinese Physics B, 2020, 29(5): 057506, http://cpb.iphy.ac.cn/article/2020/2030/cpb_29_5_057506.html

Lior M. Burko and Gaurav Khanna (2020), Climbing up the memory staircase: Equatorial zoom-whirl orbits, arXiv: 2007.1254 [gr-qc]

Jonathan Carifio (2020), Examining the String Landscape Using Data Science and Network Techniques, Northeastern University Doctoral Dissertation

Anderson S. Chaves, Alex Antonelli, Daniel T. Larson, and Efthimios Kaxiras (2020), Boosting the efficiency of ab initio electron-phonon coupling calculations through dual interpolation, arXiv: 2006.16954 [cond-mat.mtr-sci]

Wenyu Chen and Rahul Mazumder (2020), Multivariate Convex Regression at Scale, arXiv:2005.11588 [math.OC]

The CMB-S4 Collaboration: Krevork Abazaian et al (2020), CMB-S4: Forecasting Constraints on Primordial Gravitational Waves, arXiv:2008.12619 [astro-ph.CO]

Arielle Cohen, D. Kirk Lewis, Tianlun Huang, Sahar Sharifzadeh (2020), Localized Excitons in Defective Monolayer Germanium Selenide, arXiv:2005.10102 [cond-mat.mtrl-sci]

Ofer Cohen, C. Garraffo, Sofia-Paraskevi Moschou, Jeremy J. Drake, J. D. Alvarado-Gomez, Alex Glocer, and Federico Fraschetti (2020), The Space Environment and Atmospheric Joule Heating of the Habitable Zone Exoplanet TOI700-d, arXiv:2005.11587 [astro-ph.SR]

B.A. Cook, Charlie Conroy, and Pieter van Dokkum (2020), Measuring Star Formation Histories, Distances, and Metallicities with Pixel Color-Magnitude Diagrams II: Applications to nearby elliptical galaxies, arXiv: 2004.10213 [astro-ph.GA]

Eamon C. Corbett, Gustavo A. Bravo, Fabio Schunck, Luciano N. Naka, Luís F. Silveira, Scott V. Edwards (2020), Evidence for the Pleistocene Arc Hypothesis from genome‐wide SNPs in a Neotropical dry forest specialist, the Rufous‐fronted Thornbird (Furnariidae: Phacellodomus rufifrons), Molecular Ecology, doi: 10.1111/mec.15640

Jordan M Cox, Bradley Mileson, Ananthan Sadagopan, Steven Lopez (2020), Molecular Recognition and Band Alignment in 3-D Covalent Organic Frameworks for Co-Crystalline Organic Photovoltaics, ChemRxiv, doi: 10.26434/chemrxiv.10792877

Cox, Jordan; Lopez, Steven (2020), Multiconfigurational Dynamics Explain Photochemical Reactivity and Torquoselectivity Towards Fluorinated Polyacetylenes, ChemRxiv. Preprint., doi: 10.26434/chemrxiv.11980827

Kaustav K. Das, Catherine Zucker, Joshua S. Speagle, Alyssa Goodman, Gregory M. Green, and João Alves (2020), Constraining the Distance to the North Polar Spur with Gaia DR2, arXiv:2009.01320 [astro-ph.GA]

Earnest, Rebecca; Rönn, Minttu M.; Bellerose, Meghan Gift, Thomas L.; Berruti, Andrés A.; Hsu, Katherine K. ; Testa, Christian; Zhu, Lin ; Malyuta, Yelena; Menzies, Nicolas A.; Salomon, Joshua A. (2020) Population-Level Benefits of Extragenital Gonorrhea Screening among Men Who Have Sex with Men, Sexually Transmitted Diseases, doi: 10.1097/OLQ.0000000000001189

Ethan Evans (2020), Conformational Landscape Reduction of a Dynamic 29-Residue Peptide by a Perfluoroaromatic Small Molecule, ChemRXiv, doi: 10.25434/chemrxiv.12679226.v1

Reza Farhadifar, Che-Hang Yu, Gunar Fabig, Hai-Yin Wu, David B Stein, Matthew Rockman, Thomas Mueller-Reichert, Michael J Shelley, Daniel J Needleman (2020), Stoichiometric interactions explain spindle dynamics and scaling across 100 million years of nematode evolution, eLife, doi: 10.7554/eLife.55877

Zhaoqianqi Feng, Huaimin Wang, Fengbin Wang, Younghoon Oh, Cristina Berciu, Qiang Cui, Edward H. Egelman, BingXu (2020), Artificial Intracellular Filaments, Cell Reports Physical Science, doi: 10.1016/j.xcrp.2020.100085

Scott E. Field, Sigal Gottlieb, Zachary J. Grant, Leah F. Isherwood, Gaurav Khanna (2020), A GPU-accelerated mixed-precision WENO method for extremal black hole and gravitational wave physics computations, arXiv: 2010.04760 [math.NA]

M. Francisquez, T. N. Bernard, B. Zhu, A. Hakim, B. N. Rogers, and G. W. Hammett (2020), Fluid & Gyrokinetic turbulence in open field-line, helical plasmas, arXiv: 2002.11136 [physics.plasm-ph]

Alexander V. Gramolin, Deniz Aybas, Dorian Johnson, Janos Adam, and Alexander O. Sushkov (2020), Search for axion-like dark matter with ferromagnets, arXiv: 2003.03348 [hep-ex]

Gregory M. Green, Hans-Walter Rix, Leon Tschesche, Douglas Finkbeiner, Catherine Zucker, Edward F. Schlafly, Jan Rybizki, Morgan Fouesneau, Rene Andrae and Joshua Speagle (2020), Data-Driven Stellar Models, arXiv: 2006.16258 [astro-ph.GA]

Meng Gu et al (2020), Coordinated Assembly of Galaxy Groups and Clusters in the IllustrisTNG Simulations, arXiv: 2010.04166 [astro-ph.GA]

Sam Hadden and Matthew J. Payne (2020), Modeling Radial Velocity Data of Resonant Planets to Infer Migration Histories, arXiv:2005.03034 [astro-ph.EP]

Florian H¨ase et al (2020), Olympus: a benchmarking framework for noisy optimization and experiment planning, arXiv:2010.04154 [stat.ML]

Paul Z. Hanakata, Ekin D. Cubuk, David K. Campbell, and Harold S. Park (2020), Forward and Inverse Design of Kirigami via Supervised Autoencoder, arXiv:2008.05298 [cond-mat.mtrl-sci]

Yiwen Huang, Carl-Johan Haster, Salvatore Vitale, Vijay Varma, Francois Foucart, and Sylvia Biscoveanu (2020), Statistical and systematic uncertainties in extracting the source properties of neutron star – black hole binaries with gravitational waves, arXiv: 2005:11850 [gr-qc]

A.P. Hurford, J.J. Harou, L. Bonzanigo, P.A. Ray, P. Karki, L. Bharati, P. Chinnasamy (2020), Efficient and robust hydropower system design under uncertainty – A demonstration in Nepal, Renewable and Sustainable Energy Reviews, doi: 10.1016/j.rser.2020.109910

Hussain Ismat, Karim (2020), Cardiorespiratory Fitness and Virtual Navigation in Healthy Older Adults, Boston University Doctoral Dissertation, https://search.proquest.com/openview/9977101002865b899b724f70829b0f53

Shingo Ito and Qiang Cui (2020), Multi-level free energy simulation with a staged transformation approach, The Journal of Chemical Physics, doi: 10.1063/5.0012494

Jafarzanjani, Samad (2020), Numerical Modeling and Design Optimization of Metamaterials, Northeastern University Doctoral Dissertation

Weronika Jasinska, Michael Manhart, Jesse Lerner, Louis Gauthier, Adrian W. R. Serohijos and Shimon Bershtein (2020), Chromosomal barcoding of E. coli populations reveals lineage diversity dynamics at high resolution, Nat Ecol Evol, doi: 10.1038/s41559-020-1103-z

Zhiguang Jia, Jeremy D. Schmit, and Jianhan Chen (2020), Amyloid assembly is dominated by misregistered kinetic traps on an unbiased energy landscape, PNAS, doi: 10.1073/pnas.1911153117

Benjamin D. Johnsson et al (2020), A Diffuse Metal-Poor Component of the Sagittarius Stream Revealed by the H3 Survey, arXiv:2007.14408, [astro-ph.GA]

Jou, Christine (2020.), Connecting Language Representations in
Humans and Machines, Bachelor’s thesis, Harvard College, https://nrs.harvard.edu/URN-3:HUL.INSTREPOS:37364734

Harshil Kamdar, Charlie Conroy, Yuan-Sen Ting, Kareem El-Brady (2020), Spatial and Kinematic Clustering of Stars in the Galactic Disk, arXiv: 2007.10990 [astro-ph.GA]

C. Rose Kennedy, Bo Young Choi, Mary‐Grace R. Reeves, Eric N. Jacobsen (2020), Enantioselective Catalysis of an Anionic Oxy‐Cope Rearrangement Enabled by Synergistic Ion Binding, Israel Journal of Chemistry, doi: 10.1002/ijch.201900168

Leonard C. Kogos, Yunzhe Li, Jianing Liu, Yuyu Li, Lei Tian & Roberto Paiella (2020), Plasmonic ommatidia for lensless compound-eye vision, Nature Communications. doi: 10.1038/s41467-020-15460-0

Justine Kozubal, Tristan Heck, and Ricardo B. Metz (2020), Vibrational Spectroscopy of Intermediates and C–H Activation Products of Sequential Zr+ Reactions with CH4, J. Phys. Chem. A, doi: 10.1021/acs.jpca.0c07027

Dibyendu Kumar Das, Uriel Bulow, William E. Diehl, Natasha D. Durham, Fernando Senjobe, Kartik Chandran, Jeremy Luban, James B. Munro (2020), Conformational changes in the Ebola virus membrane fusion machine induced by pH, Ca2+, and receptor binding, PLOS Biology, doi: 10.1371/journal.pbio.3000626

Rui Lai and Qiang Cui (2020), Differences in the Nature of the Phosphoryl Transfer Transition State in Protein Phosphatase 1 and Alkaline Phosphatase: Insights from QM Cluster Models, J. Phys. Chem B, doi: 10.1021/acs.jpcb.0c07863

Daniel T. Larson, Wei Chen, Steven B. Torrisi, Jennifer Coulter, Shiang Fang, and Efthimios Kaxiras (2020), Effects of Structural Distortions on the Electronic Structure of T-type Transition Metal Dichalcogenides, arXiv: 2003.10473 [cond-mat.mes-hall]

Joel Leja, Joshua S. Speagle, Benjamin D. Johnson, Charlie Conroy, Pieter van Dokkum, and Marijn Franx (2020), A New Census of the 0.2 < z < 3.0 Universe. I. The Stellar Mass Function, The Astrophysical Journal, doi; 10.3847/1538-4357/ab7e27

Christopher M. Lemon, Andrew G. Maher, Anthony R. Mazzotti, David C. Powers, Miguel I. Gonzaleza and Daniel G. Nocera (2020), Multielectron C–H photoactivation with an Sb(v) oxo corrole, Chemical Communications, doi: 10.1039/C9CC09892E

Jingbai Li and Steven A Lopez (2020), Multiconfigurational Calculations and Non-Adiabatic Molecular Dynamics Explain Tricyclooctadiene Photochemical Chemoselectivity, J. Phys. Chem. A, doi: 10.1021/acs.jpca.0c05280

Longxiang Li, Annelise J. Blomberg, John D. Spengler, Brent A. Coull, Joel D. Schwartz & Petros Koutrakis (2020), Unconventional oil and gas development and ambient particle radioactivity, Nature Communications, doi: 10.1038/s41467-020-18226-w

Yuyu Li and  Roberto Paiella (2020), Terahertz radiation processes in critically coupled graphene plasmonic nanostructures, Journal of Applied Physics, doi: 10.1063/5.0027159

Yuyu Li, Khwanchai Tantiwanichapan, Anna K. Swan and Roberto Paiella (2020), Graphene plasmonic devices for terahertz optoelectronics, Nanophotonics, doi: 10.1515/nanoph-2020-0211

Dongyue Liang, Udaya Dahal, Meng Wu, Catherine J. Murphy, and Qiang Cui (2020), Ligand Length and Surface Curvature Modulate Nanoparticle Surface Heterogeneity and Electrostatics, J. Phys. Chem. C, doi: 10.1021/acs.jpcc.0c08387

Jiaqi Lin, Lei Miao, Grace Zhong, Chih-Hsin Lin, Roozbeh Dargazangy & Alfredo Alexander-Katz (2020), Understanding the synergistic effect of physicochemical properties of nanoparticles and their cellular entry pathways, Communications Biology., doi: s42003-020-0917-1

Jaclyn Y. Lock, Taylor L. Carlson, Yueyue Yu, Jing Lu, Erika C. Claud & Rebecca L. Carrier (2020), Impact of Developmental Age, Necrotizing Enterocolitis Associated Stress, and Oral Therapeutic Intervention on Mucus Barrier Properties, Scientific Reports, doi: 10.1038/s41598-020-63593-5

David M. Long, Philip J. D. Crowley, and Anushya Chandran (2020), Non-adiabatic topological energy pumps with quasiperiodic driving, arXiv:2010.02228 [cond-mat.mes-hall]

Qiyang Lu , Samuel Huberman , Hantao Zhang, Qichen Song , Jiayue Wang , Gulin Vardar, Adrian Hunt, Iradwikanari Waluyo, Gang Chen  and Bilge Yildiz  (2020), Bi-directional tuning of thermal transport in SrCoOx with electrochemically induced phase transitions, Nature Materials, doi: 10.1038/s41563-020-0612-0

Weijun Luo, Akinola D. Oyedele, Yiyi Gu, Tianshu Li, Xingzhi Wang, Amanda V. Haglund, David Mandrus, Alexander A. Puretzky, Kai Xiao, Liangbo Liang, Xi Ling (2020), Anisotropic Phonon Response of Few‐Layer PdSe2 under Uniaxial Strain, Advanced Functional Materials, doi: 10.1002/adfm.202003215

Robert Marsland III, Cui Wenping, Mehta Pankaj (2020), A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns, Scientific Reports, doi: 10.1038/s41598-020-60130-2

A. Mathews, M. Francisquez, J.W. Hughes, and D.R. Hatch (2020), Uncovering edge plasma dynamics via deep learning from partial observations, arXiv:2009.05005 [physics.plasm-ph]

Kyle J. McCulloch, and Kristen M. Koenig (2020), Krüppel-like factor/specificity protein evolution in the Spiralia and the implications for cephalopod visual system novelties, Proceedings of the Royal Society B, doi: 10.1098/rspb.2020.2055

Malcolm N. Mistry (2020), A High Spatiotemporal Resolution Global Gridded Dataset of Historical Human Discomfort Indices, Atmosphere, doi: 10.3390/atmos11080835

Morovatiyan, Mohammadrasool (2020), Fundamental Investigation of Symmetrically Expanding Premixed Flames of Gaseous Fuels and Noble Gas Working Fluids in a Constant Volume Combustion Chamber, University of Massachusetts Lowell, ProQuest Dissertations Publishing

M. Mohebujjaman et al (2020), Scalability Analysis of Direct and Iterative Solvers Used to Model Charging of Non-insulated Superconducting Pancake Solenoids, arXiv: 2007.15410 [physics.comp-ph]

Jorge Moreno, Paul Torrey, Sara L. Ellison, David R. Patton, Connor Bottrell, Asa F. L. Bluck, Maan H. Hani, Christopher C. Hayward, James S. Bullock, Philip F. Hopkins, and Lars Hernquist (2020), Spatially resolved star formation and fuelling in galaxy interactions, arXiv:2009.11289 [astro-ph.GA]

Odintsova, T.A. et al (2020), CO2–CO2 and CO2–Ar continua at millimeter wavelengths, Journal of Quantitative Spectroscopy and Radiative Transfer, doi: 10.1016/j.jqsrt.2020.107400

T. Odstrčil, N. T. Howard,  F. Sciortino,  C. Chrystal, C. Holland,  E. Hollmann,  G. McKee,  K. E. Thome, and  T. M. Wilks (2020), Dependence of the impurity transport on the dominant turbulent regime in ELM-y H-mode discharges on the DIII-D tokamak, Physics of Plasmas, doi: 10.1063/5.0010725

Jeffrey Z. Pan and Nicholas Zufelt (2020), On Intrinsic Dataset Properties for Adversarial Machine Learning, arXiv: 2005.0917 [cs.LG]

T. Patel and D. Tiwari (2020), CLITE: Efficient and QoS-Aware Co-Location of Multiple Latency-Critical Jobs for Warehouse Scale Computers, 2020 IEEE International Symposium on High Performance Computer Architecture (HPCA), San Diego, CA, USA, 2020, doi: 10.1109/HPCA47549.2020.00025

Pranay Patil, Hui Shao, and Anders W. Sandvik (2020), Anomalous U(1) to Zq cross-over in quantum and classical q-state clock models, arXiv:2009.03249 [cond-mat.str-el]

Monica Pengshung, Patrick Neal, Timothy L. Atallah, Junho Kwon, Justin R. Caram, Steven A. Lopez, Ellen M. Sletten (2020), Silicon incorporation in polymethine dyes, The Royal Society of Chemistry via ChemrXiv

Monica Pengshung, Jingbai Li, Fatemah Mukadum, Steven A. Lopez, and Ellen M. Sletten(2020), Photophysical Tuning of Shortwave Infrared Flavylium Heptamethine Dyes via Substituent Placement, ACS Organic (Chemistry) Letters, doi: 10.1021/acs.orglett.0c02213

Achilleas Pipertzis, George Papamoko, Markus Mühlinghaus, Markus Mezger, Ullrich Scherf, George Floudas (2020), What Determines the Glass Temperature and dc-Conductivity in Imidazolium-Polymerized Ionic Liquids with a Polythiophene Backbone? Macromolecules, doi: 10.1021/acs.macromol.0c00226

Reza Pourhaghighi et al (2020), BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain, Cell Systems, doi: 10.1016/j.cels.2020.03.003

Sebastian Carrasco Pro, Katia Bulekova, Brian Gregor, Adam Labadorf and Juan Ignacio Fuxman Bass (2020), Prediction of genome-wide effects of single nucleotide variants on transcription factor binding, Scientific Reports, doi: 10.1038/s41598-020-74793-4

Dmitry Prokopenko, Julian Hecker, Rory Kirchner, Brad A. Chapman, Oliver Hoffman, Kristina Mullin, Winston Hide, Lars Bertram, Nan Laird, Dawn L. DeMeo, Christoph Lange & Rudolph E. Tanzi (2020), Identification of Novel Alzheimer’s Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data, Scientific Reports, doi: s41598-020-61883-6

Yangzhong Qin, Christoph Schnedermann, Mariusz Tasior, Daniel T. Gryko, and Daniel G. Nocera (2020), Direct Observation of Different One- and Two-Photon Fluorescent States in a Pyrrolo[3,2‐b]pyrrole Fluorophor, J. Phys. Chem. Lett. , doi: 10.1021/acs.jpclett.0c00669

Loïc M. Roch, Semion K. Saikin, Florian Häse, Pascal Friederich, Randall H. Goldsmith, Salvador León, and Alán Aspuru-Guzik (2020), From Absorption Spectra to Charge Transfer in Nanoaggregates of Oligomers with Machine Learning, ACS Nano, doi: 10.1021/acsnano.0c00384

Jason W. Rocks and Pankaj Mehta (2020), Memorizing without overfitting: Bias, variance, and interpolation in over-parameterized models, arXiv:2010.13933 [stat.ML]

Andrés N Salcedo, Benjamin D Wibking, David H Weinberg, Hao-Yi Wu, Douglas Ferrer, Daniel Eisenstein, Philip Pinto (2020), Cosmology with stacked cluster weak lensing and cluster–galaxy cross-correlations, Monthly Notices of the Royal Astronomical Society, doi: 10.1093/mnras/stz2963

Anders W. Sandvik and Bowen Zhao (2020), Consistent scaling exponents at the deconfined quantum-critical point, arXiv: 2003.14305 [ cond-mat.str-el]

Andrew K. Saydjari et al (2020), Classification of Magnetohydrodynamic Simulations using Wavelet Scattering Transforms, arXiv: 2010.11963 [astro-ph.GA]

Mehmet Gokhan Sensoy, Matthew M. Montemore (2020), A Density Functional Theory Investigation of Oxidation Intermediates on Gold and Gold-Silver Surfaces, J. Phys. Chem. C, doi: 10.1021/acs.jpcc.0c01386

Debjani Sihi, Eric A. Davidson, Kathleen E. Savage, Dong Liang (2020), Simultaneous numerical representation of soil microsite production and consumption of carbon dioxide, methane, and nitrous oxide using probability distribution functions, Global Change Biology, doi: 10.1111/gcb.14855

A. Soliman et al (2020), Optical Design and Characterization of 40-GHz Detector and Module for the BICEP Array, arXiv: 2002.05254 [astro-ph.IM]

T. St. Germaine et al (2020), Optical characterization of the Keck Array and BICEP3 CMB Polarimeters from 2016 to 2019, arXiv: 2002.05197 [astro-ph.IM]

Rami V. Tabri and Christopher D. Walker (2020), Inference for Moment Inequalities: A Constrained Moment Selection Procedure, arXiv:  2008.09021 [econ.EM]

Jun Takahashi and Anders W. Sandvik (2020), Valence-bond solids, vestigial order, and emergent SO(5) symmetry in a two-dimensional quantum magnet, arXiv: 2001.10045 [cond-mat.str-el]

Tamiro, Villazon; Claeys, Pieter W; Pandey Mohit; Polkovnikov Anatoli; Chandran Anushya (2020), Persistent dark states in anisotropic central spin models, Scientific Reports, doi: 10.1038/s41598-020-73015-1

Lindsay J. Underhill, W. Stuart Dols, Sharon K. Lee, M. Patricia Fabian and Jonathan I. Levy (2020), Quantifying the impact of housing interventions on indoor air quality and energy consumption using coupled simulation models, J Expo Sci Environ Epidemiol., doi: 10.1038/s41370-019-0197-3

Pim van der Hoorn, William J. Cunningham, Gabor Lippner, Carlo Trugenberger, and Dmitri Krioukov (2020), Ollivier-Ricci curvature convergence in random geometric graphs, arXiv: 2008.01209 [math.PR]

Dorien Villafranco, Ankush Gupta, Emily Ryan, R. Glynn Holt, Sheryl M. Grace (2020), An Assessment of Homogeneous Mixture Method Cavitation Models in Predicting Cavitation in Nozzle Flow, Journal of Fluids Engineering, doi: 10.1115/1.4048287

V, Ashley Villar et al (2020), SuperRAENN: A Semi-supervised Supernova Photometric Classification Pipeline Trained on Pan-STARRS1 Medium Deep Survey Supernovae, arXiv: 2008.04921 [astro-ph.HE]

V.V. Volkov, R. Chelli, R. Righini, C.C. Perry (2020), Indigo chromophores and pigments: Structure and dynamics, Dyes and Pigments, doi: 10.1016/j.dyepig.2019.107761

Yichao Wang Prof. Sooran Kim Dr. Jingyu Lu Guangyuan Feng Prof. Xin Li (2020), A Study of Cu Doping Effects in P2‐Na0.75Mn0.6Fe0.2(CuxNi0.2‐x)O2 Layered Cathodes for Sodium‐Ion Batteries, Batteries and Supercaps, doi: 10.1002/batt.201900172

Xiaowei Wang, Yuyu Li, Reyhaneh Toufanian, Leonard C. Kogos, Allison M. Dennis, Roberto Paiella (2020), Geometrically Tunable Beamed Light Emission from a Quantum‐Dot Ensemble Near a Gradient Metasurface, Advanced Optical Materials, doi: 10.1002/adom.201901951

Jack Wisdom (2020), Meteorite transport—Revisited II, Meteoritics and Planetary Science, doi: 10.1111/maps.13463

Xiao Wu, Rachel C. Nethery, M. Benjamin Sabath, Danielle Braun, Francesca Dominici (2020), Exposure to air pollution and COVID-19 mortality in the United States, [pdf]

Xiao Wu Yi Xu Bradley P. Carlin (2020), Optimizing interim analysis timing for Bayesian adaptive commensurate designs, Statistics in Medicine, doi: 10.1002/sim.8414

Sibin Yang, Dao-Xin Yao and Anders W. Sandvik (2020), Deconfined quantum criticality in spin-1/2 chains with long-range interactions, arXiv: 2001.02821 [physics.comp-ph]

Mahdieh Yazdani, Guohui Zhang, Zhiguang Jia, Jingyi Shi, Jianmin Cui, and Jianhan Chen (2020), Nonspecific Membrane Interactions Can Modulate BK Channel Activation, bioRxiv: 2020/02/06/2020.02.05.936161

Mahdieh Yazdani, Guohui Zhang, Zhiguang Jia, Jingyi Shi, Jianmin Cui Is a corresponding author, Jianhan Chen (2020), Aromatic interactions with membrane modulate human BK channel activation, eLife 2020;9:e55571, doi: 10.7554/eLife.55571

Jingjie Yeo, Yimin Qiu, Gang Seob Jung, Yong-Wei Zhang, Markus J. Buehler, David L. Kaplan (2020), Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments, Biomaterials, doi: 10.1016/j.biomaterials.2020.119857

Hailong Wang, Erik T. Nilsen and Moneesh Upmanyu (2020), Mechanical basis for thermonastic movements of cold-hardy Rhododendron leaves, Journal f the Royal Society Interface, doi: 10.1098/rsif.2019.0751

Huize Wang and Robin Wordsworth (2020), Extremely Long Convergence Times in a 3D GCM Simulation of the Sub-Neptune Gliese 1214b, The Astrophysical Journal, doi: 10.3847/1538-4357/ab6dcc

Michael E. Xie, Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou, Liam Paninski, Adam E. Cohen (2020), High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo, bioRxiv, doi: 10.1101/2020.01.26.920256

Robert B. Zando, Atoallah Mesgarnejad, Chunzhou Pan, Sandra J. Shefelbine, Alain Karma, Randall M. Erb (2020), Enhanced toughness in ceramic-reinforced polymer composites with herringbone architectures, Composites Science and Technology, doi: 10.1016/j.compscitech.2020.108513

Krissia Zawadzki, Luhang Yang, and Adrian E. Feiguin (2020), Beyond perturbation theory: A time-dependent approach to inelastic scattering spectroscopies in- and away from equilibrium, arXiv: 2008.09709 [cond-mat-str-el]

Ioana A. Zelko and Douglas P. Finkbeiner (2020), Implications of Grain Size Distribution and Composition for the Correlation Between Dust Extinction and Emissivity, arXiv:2009.11869 [astro-ph.GA]

Ioana A. Zelko and Douglas P. Finkbeiner (2020), Impact of Dust on CMB Spectral Distortion Measurements, arXiv: 2010.06589 [astro-ph.CO]

C. Zhang et al (2020), Characterizing the Sensitivity of 40 GHz TES Bolometers for BICEP Array, arXiv:2002.05219 [astro-ph.IM]

Lei Zhang, Justin A. Reyes, Stefanos Kourtis, Claudio Chamon, Eduardo R. Mucciolo, and Andrei E. Ruckenstein (2020), Nonuniversal entanglement level statistics in projection-driven quantum circuits, arXiv: 2001.11428 [cond-mat.stat-mech]

Yong Zhang, He Yang, David Turra, Shiguo Zhou, Dilay Hazal Ayhan, Gregory A. DeIulio, Li Guo, Karen Broz, Nathan Wiederhold, Jeffrey J. Coleman, Kerry O’ Donnell, Ilan Youngster, Alexander J. McAdam, Sergey Savinov, Terrance Shea, Sarah Young, Qiandong Zeng, Martijn Rep, Eric Pearlman, David C. Schwartz, Antonio Di Pietro, H. Corby Kistler & Li-Jun Ma  (2020), The genome of opportunistic fungal pathogen Fusarium oxysporum carries a unique set of lineage-specific chromosomes, Nature Communications Biology, doi: s42003-020-0770-2

Bowen Zhao, Jun Takahashi, and Anders W. Sandvik1 (2020), Multicritical deconfined quantum-criticality and Lifshitz point of a helical valence-bond phase, arXiv:2005:10184 [cond-mat.str.el]

Muni Zhou, Nuno F. Loureiro, Dmitri A. Uzdensky (2020), Multi-scale dynamics of magnetic flux tubes and inverse magnetic energy transfer, arXiv: 2001.07291 [astro-ph.HE]

Catherine Zucker, Joshua S. Speagle, Edward F. Schlafly, Gregory M. Green, Douglas P. Finkbeiner, Alyssa Goodman, João Alves (2020), A compendium of distances to molecular clouds in the Star Formation Handbook, arXiv: 2001.00591 [astro-ph.GA]

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact hlh@mit.edu

 


Prior Years

2019 | 2018 | 2017 | 2016 and earlier