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March Publications

April 2, 2020

Below is a selection of papers that appeared in March 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT's Engaging Cluster all of which are housed at the MGHPCC.

Caitlin M. Baker, Sarah L. Boyer, Gonzalo Giribet (2020), A well‐resolved transcriptomic phylogeny of the mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) reveals signatures of Gondwanan vicariance, Journal of Biogeography, doi: 10.1111/jbi.13828
Stephen Carr, Chenyuan Li, Ziyan Zhu, Efthimios Kaxiras, Subir Sachdev, Alexander Jura Kruchkov (2020), Ultraheavy and ultrarelativistic Dirac quasiparticles in sandwiched graphenes, Nano Letters, doi: 10.1021/acs.nanolett.9b04979
Cox, Jordan; Lopez, Steven (2020), Multiconfigurational Dynamics Explain Photochemical Reactivity and Torquoselectivity Towards Fluorinated Polyacetylenes, ChemRxiv. Preprint., doi: 10.26434/chemrxiv.11980827
M. Francisquez, T. N. Bernard, B. Zhu, A. Hakim, B. N. Rogers, and G. W. Hammett (2020), Fluid & Gyrokinetic turbulence in open field-line, helical plasmas, arXiv: 2002.11136 [physics.plasm-ph]
Alexander V. Gramolin, Deniz Aybas, Dorian Johnson, Janos Adam, and Alexander O. Sushkov (2020), Search for axion-like dark matter with ferromagnets, arXiv: 2003.03348 [hep-ex]
C. Rose Kennedy, Bo Young Choi, Mary‐Grace R. Reeves, Eric N. Jacobsen (2020), Enantioselective Catalysis of an Anionic Oxy‐Cope Rearrangement Enabled by Synergistic Ion Binding, Israel Journal of Chemistry, doi: 10.1002/ijch.201900168
Daniel T. Larson, Wei Chen, Steven B. Torrisi, Jennifer Coulter, Shiang Fang, and Efthimios Kaxiras (2020), Effects of Structural Distortions on the Electronic Structure of T-type Transition Metal Dichalcogenides, arXiv: 2003.10473 [cond-mat.mes-hall]
Qiyang Lu , Samuel Huberman , Hantao Zhang, Qichen Song , Jiayue Wang , Gulin Vardar, Adrian Hunt, Iradwikanari Waluyo, Gang Chen  and Bilge Yildiz  (2020), Bi-directional tuning of thermal transport in SrCoOx with electrochemically induced phase transitions, Nature Materials, doi: 10.1038/s41563-020-0612-0
Robert Marsland III, Cui Wenping, Mehta Pankaj (2020), A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns, Scientific Reports, doi: 10.1038/s41598-020-60130-2
Morovatiyan, Mohammadrasool (2020), Fundamental Investigation of Symmetrically Expanding Premixed Flames of Gaseous Fuels and Noble Gas Working Fluids in a Constant Volume Combustion Chamber, University of Massachusetts Lowell, ProQuest Dissertations Publishing
Dmitry Prokopenko, Julian Hecker, Rory Kirchner, Brad A. Chapman, Oliver Hoffman, Kristina Mullin, Winston Hide, Lars Bertram, Nan Laird, Dawn L. DeMeo, Christoph Lange & Rudolph E. Tanzi (2020), Identification of Novel Alzheimer’s Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data, Scientific Reports, doi: 10.1038/s41598-020-61883-6
Jingjie Yeo, Yimin Qiu, Gang Seob Jung, Yong-Wei Zhang, Markus J. Buehler, David L. Kaplan (2020), Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments, Biomaterials, doi: 10.1016/j.biomaterials.2020.119857
Hailong Wang, Erik T. Nilsen and Moneesh Upmanyu (2020), Mechanical basis for thermonastic movements of cold-hardy Rhododendron leaves, Journal f the Royal Society Interface, doi: 10.1098/rsif.2019.0751
Huize Wang and Robin Wordsworth (2020), Extremely Long Convergence Times in a 3D GCM Simulation of the Sub-Neptune Gliese 1214b, The Astrophysical Journal, doi: 10.3847/1538-4357/ab6dcc
Michael E. Xie, Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou, Liam Paninski, Adam E. Cohen (2020), High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo, bioRxiv, doi: 10.1101/2020.01.26.920256
Yujia Xue, Ian G. Davison, David A. Boas, Lei Tian (2020), Single-Shot 3D Widefield Fluorescence Imaging with a Computational Miniature Mesoscope, arXiv:2003.11994
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact hlh@nullmit.edu

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MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This... A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Higgs Boson Spotted in Holyoke?
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
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Outreach & Education Projects

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