March Publications

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Below is a selection of papers that appeared in March 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT’s Engaging Cluster all of which are housed at the MGHPCC.

Caitlin M. Baker, Sarah L. Boyer, Gonzalo Giribet (2020), A well‐resolved transcriptomic phylogeny of the mite harvestman family Pettalidae (Arachnida, Opiliones, Cyphophthalmi) reveals signatures of Gondwanan vicariance, Journal of Biogeography, doi: 10.1111/jbi.13828

Stephen Carr, Chenyuan Li, Ziyan Zhu, Efthimios Kaxiras, Subir Sachdev, Alexander Jura Kruchkov (2020), Ultraheavy and ultrarelativistic Dirac quasiparticles in sandwiched graphenes, Nano Letters, doi: 10.1021/acs.nanolett.9b04979

Cox, Jordan; Lopez, Steven (2020), Multiconfigurational Dynamics Explain Photochemical Reactivity and Torquoselectivity Towards Fluorinated Polyacetylenes, ChemRxiv. Preprint., doi: 10.26434/chemrxiv.11980827

M. Francisquez, T. N. Bernard, B. Zhu, A. Hakim, B. N. Rogers, and G. W. Hammett (2020), Fluid & Gyrokinetic turbulence in open field-line, helical plasmas, arXiv: 2002.11136 [physics.plasm-ph]

Alexander V. Gramolin, Deniz Aybas, Dorian Johnson, Janos Adam, and Alexander O. Sushkov (2020), Search for axion-like dark matter with ferromagnets, arXiv: 2003.03348 [hep-ex]

C. Rose Kennedy, Bo Young Choi, Mary‐Grace R. Reeves, Eric N. Jacobsen (2020), Enantioselective Catalysis of an Anionic Oxy‐Cope Rearrangement Enabled by Synergistic Ion Binding, Israel Journal of Chemistry, doi: 10.1002/ijch.201900168

Daniel T. Larson, Wei Chen, Steven B. Torrisi, Jennifer Coulter, Shiang Fang, and Efthimios Kaxiras (2020), Effects of Structural Distortions on the Electronic Structure of T-type Transition Metal Dichalcogenides, arXiv: 2003.10473 [cond-mat.mes-hall]

Qiyang Lu , Samuel Huberman , Hantao Zhang, Qichen Song , Jiayue Wang , Gulin Vardar, Adrian Hunt, Iradwikanari Waluyo, Gang Chen  and Bilge Yildiz  (2020), Bi-directional tuning of thermal transport in SrCoOx with electrochemically induced phase transitions, Nature Materials, doi: 10.1038/s41563-020-0612-0

Robert Marsland III, Cui Wenping, Mehta Pankaj (2020), A minimal model for microbial biodiversity can reproduce experimentally observed ecological patterns, Scientific Reports, doi: 10.1038/s41598-020-60130-2

Morovatiyan, Mohammadrasool (2020), Fundamental Investigation of Symmetrically Expanding Premixed Flames of Gaseous Fuels and Noble Gas Working Fluids in a Constant Volume Combustion Chamber, University of Massachusetts Lowell, ProQuest Dissertations Publishing

Dmitry Prokopenko, Julian Hecker, Rory Kirchner, Brad A. Chapman, Oliver Hoffman, Kristina Mullin, Winston Hide, Lars Bertram, Nan Laird, Dawn L. DeMeo, Christoph Lange & Rudolph E. Tanzi (2020), Identification of Novel Alzheimer’s Disease Loci Using Sex-Specific Family-Based Association Analysis of Whole-Genome Sequence Data, Scientific Reports, doi: 10.1038/s41598-020-61883-6

Jingjie Yeo, Yimin Qiu, Gang Seob Jung, Yong-Wei Zhang, Markus J. Buehler, David L. Kaplan (2020), Adverse effects of Alport syndrome-related Gly missense mutations on collagen type IV: Insights from molecular simulations and experiments, Biomaterials, doi: 10.1016/j.biomaterials.2020.119857

Hailong Wang, Erik T. Nilsen and Moneesh Upmanyu (2020), Mechanical basis for thermonastic movements of cold-hardy Rhododendron leaves, Journal f the Royal Society Interface, doi: 10.1098/rsif.2019.0751

Huize Wang and Robin Wordsworth (2020), Extremely Long Convergence Times in a 3D GCM Simulation of the Sub-Neptune Gliese 1214b, The Astrophysical Journal, doi: 10.3847/1538-4357/ab6dcc

Michael E. Xie, Yoav Adam, Linlin Z. Fan, Urs L. Böhm, Ian Kinsella, Ding Zhou, Liam Paninski, Adam E. Cohen (2020), High fidelity estimates of spikes and subthreshold waveforms from 1-photon voltage imaging in vivo, bioRxiv, doi: 10.1101/2020.01.26.920256

Yujia Xue, Ian G. Davison, David A. Boas, Lei Tian (2020), Single-Shot 3D Widefield Fluorescence Imaging with a Computational Miniature Mesoscope, arXiv:2003.11994

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact hlh@mit.edu

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