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June Publications

July 1, 2020

Below is a selection of papers that appeared in May 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT's Engaging Cluster all of which are housed at the MGHPCC.

Simon Axelrod and Rafael Gómez-Bombarelli (2020), GEOM: Energy-annotated molecular conformations for property prediction and molecular generation, arXiv: 2006.05531 [physics.comp-ph]
Cedric Flamant, Pavlos Protopapas, David Sondak (2020), Solving Differential Equations Using Neural Network Solution Bundles, arXiv: 2006.14372 [cs.LG]
Daniel M. Gross, Stephanie D. Preston (2020), Darwin and the Situation of Emotion Research, Emotion Review, doi: 10.1177/1754073920930802
Byungsu Kwon, Taraknath Mandal, Matthew R. Elkins, Younghoon Oh, Qiang Cui, Mei Hong (2020), Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations, Journal of Molecular Biology, doi: 10.1016/j.jmb.2020.06.017
Reza Pourhaghighi, et al (2020), BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain, Cell Systems, doi: 10.1016/j.cels.2020.03.003
Mohammad Mahdi Salary and Hossein Mosallaei (2020), Tunable All-dielectric Metasurfaces for Phase-only Modulation of Transmitted Light based on Quasi-bound States in the Continuum, ACS Photonics, doi: 10.1021/acsphotonics.0c00554
F. Sciortino, N.T. Howard, E.S. Marmar, T. Odstrcil, N.M. Cao, R. Dux, Y. Marzouk, L.M. Milanese, M.L. Reinke, J.E. Rice, P. Rodriguez-Fernandez (2020), Inference of Experimental Radial Impurity Transport on Alcator C-Mod: Bayesian Parameter Estimation and Model Selection, arXiv: 2006.06789 [physics.plasm.ph]
Mohammad Mahdi Tavakoli, Giovanni Azzellino, Marek Hempel, Ang‐Yu Lu, Francisco J. Martin‐Martinez, Jiayuan Zhao, Jingjie Yeo, Tomas Palacios, Markus J. Buehler, Jing Kong (2020), Synergistic Roll‐to‐Roll Transfer and Doping of CVD‐Graphene Using Parylene for Ambient‐Stable and Ultra‐Lightweight Photovoltaics, Advanced Functional Materials, doi: 10.1002/adfm.202001924
X. Wu, D. Braun, J. Schwartz, M. A. Kioumourtzoglou, F. Dominici (2020), Evaluating the impact of long-term exposure to fine particulate matter on mortality among the elderly, Science Advances, doi: 10.1126/sciadv.aba5692
Rakesh K. Yadav and Jeremy Bloxham (2020), Deep rotating convection generates the polar hexagon on Saturn, PNAS, doi: 10.1073/pnas.2000317117
Ziyan Zhu, Stephen Carr, Daniel Massatt, Mitchell Luskin, and Efthimios Kaxiras (2020), Twisted Trilayer Graphene: a Precisely Tunable Platform for Correlated Electrons, arXiv:2006.00399
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact hlh@nullmit.edu

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MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This... A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Higgs Boson Spotted in Holyoke?
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
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Collaborative projects

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Outreach & Education Projects

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