July Publications

August 2, 2021

Cosmological constraints on Dark Matter interactions with Ordinary Matter? Connections between extreme precipitation events in the Northeast US, Atlantic variability, and climate change? Bayesian optimization of categorical variables informed by expert knowledge? This month’s selection of publications featuring research using the MGHPCC.

Sebastian Bohr (2021), Dark Acoustic Oscillations in Structure Formation: The High Redshift Universe, Doctoral Dissertation University of Iceland,

Manuel A. Buen-Abad, Rouven Essig, David McKeen, Yi-Ming Zhong (2021), Cosmological Constraints on Dark Matter Interactions with Ordinary Matter, arXiv:2107.12377 [astro-ph.CO]

Qiuming Chen, Yanchang Wu, Zhaolin Huang, Wenli Zhang, and Wanmeng Mu (2021), Molecular Characterization of a Mesophilic Cellobiose 2-Epimerase That Maintains a High Catalytic Efficiency at Low Temperatures, Journal of Agricultural and Food Chemistry Article ASAP, doi: 10.1021/acs.jafc.1c02025

William Fitzhugh, Xi Chen, Yichao Wang, Luhan Ye and Xin Li (2021), Solid–electrolyte-interphase design in constrained ensemble for solid-state batteries, Energy Environ. Sci., doi: 10.1039/D1EE00754H

Anyuan Gao et al (2021), Layer Hall effect in a 2D topological Axion antiferromagnet, arXiv:2107.10233 [cond.mat.mtrl-sci]

Florian Häse, Matteo Aldeghi, Riley J. Hickman, Loïc M. Roch, and Alán Aspuru-Guzik (2021), Gryffin: An algorithm for Bayesian optimization of categorical variables informed by expert knowledge, Applied Physics Reviews, doi: 10.1063/5.0048164

Huanping Huang et al (2021), Rise in Northeast US extreme precipitation caused by Atlantic variability and climate change, Weather and Climate Extremes, doi: 10.1016/j.wace.2021.100351

Weiwen Ji, Alexander Robel, Eli Tziperman, Jun Yang (2021), Laurentide Ice Saddle Mergers Drive Rapid Sea Level Drops During Glaciations, Geophysical Research Letters, doi: 10.1029/2021GL094263

Ned Kleiner, Pak Wah Chan, Lei Wang, Ding Ma, Zhiming Kuang (2021), Effects of Climate Model Mean-State Bias on Blocking Underestimation, Geophysical Research Letters, doi: 10.1029/2021GL094129

Benjamin Levy, Kristen Windoloski, John Ludlam (2021), Matrix and agent-based modeling of threats to a diamond-backed terrapin population, Mathematical Biosciences, doi: 10.1016/j.mbs.2021.108672

Shao-Xiong Lennon Luo, Richard Y. Liu, Sungsik Lee, and Timothy M. Swager (2021), Electrocatalytic Isoxazoline–Nanocarbon Metal Complexes, Journal of the American Chemical Society, doi: 10.1021/jacs.1c05439

Smarak Maity et al. (2021), Coherent coupling of mechanics to a single nuclear spin, arXiv: 2107.10961 []

Taraknath Mandal, Saverio E. Spagnolie, Anjon Audhya, Qiang Cui (2021), Protein Induced Membrane Curvature in Coarse-Grained Simulations: Binding Interface, Insertion Depth and Lipid Spontaneous Curvature, Biophysical Journal, doi: 10.1016/j.bpj.2021.05.029

Michael T. Payne, Constanze N. Neumann, Eli Stavitski, and Mircea Dincǎ (2021), Complexes of Platinum Group Metals with a Conformationally Locked Scorpionate in a Metal–Organic Framework: An Unusually Close Apical Interaction of Palladium(II), Inorganic Chemistry Article ASAP, doi: 10.1021/acs.inorgchem.1c00941

A. Molavi Tabrizi et al, (2021), Spatiotemporal Organization of Electromechanical Phase Singularities during High-Frequency Cardiac Arrhythmias, arXiv: 2107.09223 [cond-mat.soft]

Waleed Tahir and Lei Tian (2021), Adaptive 3D descattering with a dynamic synthesis network, arXiv: 2107.00484 [eess.IV]

Haoyue Wang, Shibal Ibrahim, Rahul Mazumder (2021), Nonparametric Finite Mixture Models with Possible Shape Constraints: A Cubic Newton Approach, arXiv: 2107.08535 [stats.CO]

Zhi-Cheng Yang, Yaodong Li, Matthew P. A. Fisher, and Xiao Chen (2021), Entanglement phase transitions in random stabilizer tensor networks, arXiv: 2107.12376 [cond.mat.stat-mech]

Yancong Zhang, Kelsey N Thompson, Curtis Huttenhower, Eric A Franzosa (2021), Statistical approaches for differential expression analysis in metatranscriptomics, Bioinformatics, doi: 10.1093/bioinformatics/btab327

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact


MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This... A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Higgs Boson Spotted in Holyoke?
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
All Research Projects

Collaborative projects

ALL Collaborative PROJECTS

Outreach & Education Projects

See ALL Scholarships
100 Bigelow Street, Holyoke, MA 01040