May Publications

June 3, 2019

Below is a selection of papers that appeared in May 2019 reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey Cluster, Northeastern’s Discovery Cluster, and the Boston University Shared Computing Cluster all of which are housed at the MGHPCC.
Asanga Bandara, Afra Panahi, George A. Pantelopulos, Tetsuro Nagai, and John E. Straub (2019), Exploring the impact of proteins on the line tension of a phase-separating ternary lipid mixture, The Journal of Chemical Physics, doi: 10.1063/1.5091450
Ligia R. Benavides, Julia G. Cosgrove, Mark S. Harvey, Gonzalo Giribet (2019), Phylogenomic interrogation resolves the backbone of the Pseudoscorpiones Tree of Life, Molecular Phylogenetics and Evolution, doi: 10.1016/j.ympev.2019.05.023
Pak‐Wah Chan, Pedram Hassanzadeh, Zhiming Kuang (2019), Evaluating Indices of Blocking Anticyclones in Terms of Their Linear Relations With Surface Hot Extremes, Geophysical Research Letters, doi: 10.1029/2019GL083307
Sarah C. Conner, Lisa M. Sullivan, Emelia J. Benjamin, Michael P. LaValley, Sandro Galea, Ludovic Trinquart (2019), Adjusted restricted mean survival times in observational studies, Statistics in Medicine, doi: 10.1002/sim.8206
Feng Ding and Robin D. Wordsworth (2019), A New Line-by-line General Circulation Model for Simulations of Diverse Planetary Atmospheres: Initial Validation and Application to Exoplanet GJ 1132B, arXiv: 1905.04635 [astro-ph.EP]
William Fitzhugh, Fan Wu, Luhan Ye, Wenye Deng, Pengfei Qi, Xin Li (2019), A High‐Throughput Search for Functionally Stable Interfaces in Sulfide Solid‐State Lithium Ion Conductors, Advanced Energy Materials, doi: 10.1002/aenm.201900807
Barak Gabai, Xi Yin (2019), On The S-Matrix of Ising Field Theory in Two Dimensions, arXiv: 1905.00710 [hep-th]
Brandt A.L. Gaches, Stella S.R. Offner, Thomas G. Bisbas (2019), The Astrochemical Impact of Cosmic Rays in Protoclusters I: Molecular Cloud Chemistry, arXiv: 1905.02232 [astro-ph.GA]
Gregory M. Green, Edward Schlafly, Catherine Zucker, Joshua S Speagle, Douglas Finkbeiner (2019), A 3D Dust Map Based on Gaia, Pan-STARRS 1 and 2MASS, arXiv: 1905.02734 [astro-ph.GA]
Jonathan I. Leckenby, Miranda A. Chacon, Adriaan O. Grobbelaar, Jeff W. Lichtman (2019), Imaging Peripheral Nerve Regeneration: A New Technique for 3D Visualization of Axonal Behavior, Journal of Surgical Research, doi: 10.1016/j.jss.2019.04.046
Xinzhi Li, Amit Das, Dapeng Bi (2019), Mechanical heterogeneity in tissues promotes rigidity and controls cellular invasion, arXiv: 1905.02697 []
Austin Thai and Sheryl M. Grace (2019), Prediction of small quadrotor blade induced noise, 25th AIAA/CEAS Aeroacoustics Conference, 20-23 May, 2019, Delft, The Netherlands, doi: 10.2514/6.2019-2684
Thomas L. Williams, Steven A. Lopez, Leila F. Deravi (2019), A Sustainable Route To Synthesize the Xanthommatin Biochrome via an Electro-catalyzed Oxidation of Tryptophan Metabolites, ACS Sustainable Chem. Eng., doi: 10.1021/acssuschemeng.9b01144
Xiao Wu, Yi Xu, Bradley P. Carlin (2019), Optimizing Interim Analysis Timing for Bayesian Adaptive Commensurate Designs, arXiv: 1905.07456 [stat.AP]
Phelan Yu, Lawrence W. Cheuk, Ivan Kozyryev, and John M. Doyle (2019), A Scalable Quantum Computing Platform Using Symmetric-Top Molecules, arXiv: 1905.06439 [physics.atom-ph]
Krissia Zawadzki and Adrian E. Feiguin (2019), Time and momentum-resolved tunneling spectroscopy of pump-driven non-thermal excitations in Mott insulators, arXiv: 1905.08166 [cond-mat.str-el]
Jiawei Zhuang, Daniel J. Jacob, Judit Flo Gaya, Robert M. Yantosca, Elizabeth W. Lundgren, Melissa P. Sulprizio, Sebastian D. Eastham (2019), Enabling immediate access to Earth science models through cloud computing: application to the GEOS-Chem model, Bulletin of the American Meteorological Society, doi: 10.1175/BAMS-D-18-0243.1
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact


MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
All Research Projects

Collaborative projects

ALL Collaborative PROJECTS

Outreach & Education Projects

See ALL Scholarships
100 Bigelow Street, Holyoke, MA 01040