June/July 2023 Publications

August 1, 2023

Outspiralling Binary Stars? Tropomyosin pivoting? Pulsed-power-driven exploding planar wire arrays? A selection of recent publications featuring research using the MGHPCC.

Stefanos Aretakis et al (2023), An observational signature for extremal black holes, arXiv: 2307.03963 [gr-qc] 

Matthew L. N. Ashby et al (2023), The SPHEREx Target List of Ice Sources (SPLICES), The Astrophysical Journal, doi: 10.3847/1538-4357/acc86b 

Auger, Joshua (2023), Quantitative Assessment and Mechanical Consequences of Bone Density and Microstructure in Hip Osteoarthritis, Boston University ProQuest Dissertations Publishing

Sylvia Biscoveanu, Kyle Kremer, and Eric Thrane (2023), Probing the Efficiency of Tidal Synchronization in Outspiralling Double White Dwarf Binaries with LISA, The Astrophysical Journal, doi: 10.3847/1538-4357/acc585 

Sayandeep Biswas et al (2023), Predicting Critical Properties and Acentric Factors of Fluids Using Multitask Machine Learning, J. Chem. Inf. Model., doi: 10.1021/acs.jcim.3c00546 

Marie Breeur et al (2023), Optimal transport for automatic alignment of untargeted metabolomic data, arXiv: 2306.03218 [q-bio.QM] 

Vedant Chandra et al (2023), Discovery of the Magellanic Stellar Stream Out to 100 Kiloparsecs, arXiv: 2306.15179 [astro-ph.GA] 

Hamza Tahir Chaudhry et al (2023), Long Sequence Hopfield Memory, arXiv: 2306.04532 [cs.NE] 

Richard Rabideau Childers et al (2023), Selection on size has generated distinctive paired wing flight systems for butterfly flight and migration, via ResearchSquare; doi: 10.21203/ 

Tauana J. Canha et al (2023), Rampant loss of universal metazoan genes revealed by a chromosome-level genome assembly of the parasitic Nematomorpha, Current Biology, doi: 10.1016/j.cub.2023.07.003 

Yunsie Chung and William H. Green (2023), Machine learning from quantum chemistry to predict experimental solvent effects on reaction rates, ChemRxiv, doi: 10.26434/chemrxiv-2023-f20bg 

R. Datta et al (2023), Plasma flows during the ablation stage of an over-massed pulsed-power-driven exploding planar wire array, arXiv:2306.03304 [physics.plasma-ph] 

Yunsie Chung and William H. Green (2023), Computing Kinetic Solvent Effects and Liquid Phase Rate Constants Using Quantum Chemistry and COSMO-RS Methods, The Journal of Physical Chemistry A, doi: 10.1021/acs.jpca.3c01825 

Michael S. Dimitriyev, Abhiram Reddy, and Gregory M. Grason (2023), Medial packing, frustration and competing network phases in strongly-segregated block copolymers, arXiv: 2306.02598 [cond-mat.soft]

Sebastian D. Eastham et al (2023), Global impacts of aviation on air quality evaluated at high resolution, EGUsphere, doi: 10.5194/egusphere-2023-695 

Derek Egolf and Stavros Tripakis (2023), Synthesis of Distributed Protocols by Enumeration Modulo Isomorphisms, arXiv: 2306.02967 [cs.LO] 

Anyuan Gao et al (2023), Quantum metric nonlinear Hall effect in a topological Enumeration Modulo Isomorphisms, arXiv: 2306.09575 [cond-mat.mes-hall] 

Grossman-Ponemon, B.E., Mesgarnejad, A. & Karma (2023), Topology-enhanced mechanical stability of swelling nanoporous electrodes, npj Comput. Mater., doi: 10.1038/s41524-023-01047-y

Dominick P. Guida et al (2023), Methods for Tomographic Segmentation in Pseudo-Cylindrical Coordinates for Bobbin-Type Batteries, ACS Meas. Sci. Au, doi: 10.1021/acsmeasuresciau.3c00015 

Sharut Gupta et al (2023), Structuring Representation Geometry with​ Rotationally Equivariant Contrastive Learning, arXiv: 2306.13924 [cs.LG] 

Stella Huynh et al (2023), Whole-genome Analyses Reveal Past Population Fluctuations and Low Genetic Diversities of the North Pacific Albatrosses, Molecular Biology and Evolution, doi: 10.1093/molbev/msad155 

Shibal Ibrahim et al (2023), COMET: Learning Cardinality Constrained Mixture of Experts with Trees and Local Search, arXiv: 2306.02824 [cs.LG] 

Tousif Islam and Gaurav Khanna (2023), Interplay between numerical relativity and perturbation theory: finite size effects, arxiv: 2306.08767 [gr-qc] 

Tousif Islam and Gaurav Khanna (2023), On the approximate relation between black-hole perturbation theory and numerical relativity, arXiv: 2307.03155 [gr-qc] 

Tejas Jayashankar et al (2023), Score-based Source Separation with Applications to Digital Communication Signals, arXiv: 2306.14411 [cs.LG] 

Marius Kadek et al (2023), Band structures and Z2 invariants of two-dimensional transition metal dichalcogenide monolayers from fully relativistic Dirac-Kohn-Sham theory using Gaussian-type orbitals, Phys. Rev. Materials, doi: 10.1103/PhysRevMaterials.7.064001 

William Lehman, Michael J. Rynkiewicz (2023), Troponin-I–induced tropomyosin pivoting defines thin-filament function in relaxed and active muscle, J Gen Physiol, doi: 10.1085/jgp.202313387 

Yi-Lun Liao et al (2023), EquiformerV2: Improved Equivariant Transformer for Scaling to Higher-Degree Representations, arXiv: 2306.12059 [cs.LG]

David M. Long et al (2023), Beyond Fermi’s golden rule with the Jacobi method, arXiv: 2306.16457 [quant-ph]

Nguyen, L.H., Okin, D., Drew, D.A. et al (2023), Metagenomic assessment of gut microbial communities and risk of severe COVID-19, Genome Med, doi: 10.1186/s13073-023-01202-6

Cameron J. Owen et al (2023), Unraveling the Catalytic Effect of Hydrogen Adsorption on Pt Nanoparticle Shape-Change, arXiv: 2306.00901 [cond-mat.mtrl-sci] 

George V. Papamokos, Efthimios Kaxiras (2023), How to evict HP1 from H3: Using a complex salt bridge, Biophysical Chemistry, doi: 10.1016/j.bpc.2023.107062 

Apakorn Phasuk and Ricardo B. Metz (2023), Al+ Activates Acetone to Form Pinacolate, J. Phys. Chem. Lett., doi: 10.1021/acs.jpclett.3c01360 

Michael A. Rawlins and Ambarish V. Karmalkar (2023), Regime Shifts in Arctic Terrestrial Hydrology Manifested From Impacts of Climate Warming, The Cryosphere Discuss, doi: 10.5194/tc-2023-84

Nicolas Romeo, Jonasz Słomka, Jörn Dunkel and Keaton J. Burns (2023), Vortex line entanglement in active Beltrami flows, arXiv: 2306.01062 [physics.flu-dyn] 

Tikale Sahil (2023), Market Driven Elastic Secure Infrastructure, Boston University ProQuest Dissertations Publishing

Vadim E. Semenov et al (2023), Formation of Galactic Disks I: Why did the Milky Way’s Disk Form Unusually Early? arXiv: 2306.09398 [astro-ph.GA] 

Vadim A. Semenov et al (2023), Formation of Galactic Disks II: the Physical Drivers of Disk Spin-up, arXiv: 2306.13125 [astro-ph.GA] 

Shah, Darshil Manish (2023), 3D Printing of and Light Scattering in Highly Filled Systems for Mechanical Metamaterials, University of Massachusetts Lowell ProQuest Dissertations Publishing

P. Shukla, V. F. Pavlidis, E. Salman and A. K. Coskun (2023), “TREAD-M3D: Temperature-Aware DNN Accelerators for Monolithic 3D Mobile Systems,” in IEEE Transactions on Computer-Aided Design of Integrated Circuits and Systems, doi: 10.1109/TCAD.2023.3285039

Lin Su et al (2023), Dipolar quantum solids emerging in a Hubbard quantum simulator, arXiv: 2306.00888 [cond-mat.quant-gas] 

Haoyuan Sun et al (2023), A Unified Approach to Controlling Implicit Regularization via Mirror Descent, arXiv: 2306.13853 [cs.LG] 

Kelsey N. Thompson et al (2023), Alterations in the gut microbiome implicate key taxa and metabolic pathways across inflammatory arthritis phenotypes, Science Translational Medicine, doi: 10.1126/scitranslmed.abn4722 

Yu Tian et al (2023), Curvature-based Clustering on Graphs, arXiv: 2307.11055 [cs.SI] 

Maria Tikhanovskaya, Ali Lavasani, Matthew P. A. Fisher, and Sagar Vijay (2023), Universality of the cross entropy in Z2 symmetric monitored quantum circuits, arXiv: 2306.00058 [quat-ph] 

Sofia L. Vega and Rachel C. Nethery (2023), Spatio-temporal quasi-experimental methods for rare disease outcomes: The impact of reformulated gasoline on childhood hematologic cancer, arXiv: 2307.09546 [stat.AP] 

Mark S. Veillette and Virginia Goodwin (2023), Mission Optimized Weather Nowcasting for Flight Planning, AIAA 2023-4095 Session: Atmospheric and Space Environments Virtual Session, doi: 10.2514/6.2023-4095

Hao Wang and Lei Tian (2023), Local Conditional Neural Fields for Versatile and Generalizable Large-Scale Reconstructions in Computational Imaging, arXiv: 2307.06207 [eess.IV] 

Trent Weiss et al (2023), Characterizing the Impact of Oligomerization on Redox Flow Cell Performance, Batteries & Supercaps, doi: 10.1002/batt.202300034 

Emily Williams et al (2023), Near-Field Wall-Modeled Large-Eddy Simulation of the NASA X-59 Low-Boom Flight Demonstrator, arXiv: 2307.02725 [physics.flu-dyn] 

Kaiyang Yin et al (2023), Hierarchical structure formation by crystal growth-front instabilities during ice templating, PNAS, doi: 10.1073/pnas.2210242120 

Krissia Zawadzki et al (2023), Work statistics and Entanglement across the fermionic superfluid-insulator transition, arXiv: 2307.13059 [quant-ph] 

Cheng Zeng et al (2023), Machine Learning Accelerated Discovery of Corrosion-resistant High-entropy Alloys, arXiv: 2307.06384 [cond-mat.mtrl] 

Muni Zhou, Zhuo Liu, and Nuno F. Loureiro (2023), Electron heating in kinetic-Alfvén-wave turbulence, PNAS, doi: 10.1073/pnas.2220927120 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact


MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
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Collaborative projects

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Outreach & Education Projects

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