June Publications

July 7, 2021

The impact of dust on cosmic microwave background radiation measurements? Waiting policies for cloud-enabled schedulers? Staphylococcal nuclease mutants? This month’s selection of publications featuring research using the MGHPCC.

T. Aarrestad et al (2021), The Dark Machines Anomaly Score Challenge: Benchmark Data and Model Independent Event Classification for the Large Hadron Collider, arXiv: 2105:14027 []
P. Ambati, N. Bashir, D. Irwin, and P. Shenoy (2021), Modeling and Analyzing Waiting Policies for Cloud-Enabled Schedulers, IEEE Transactions on Parallel and Distributed Systems, vol. 32, no. 12, pp. 3081-3100, 1 Dec. 2021, doi: 10.1109/TPDS.2021.3086270
Matteo Braglia, Xingang Chen, and Dhiraj Kumar Hazra (2021), Uncovering the History of Cosmic Inflation from Anomalies in Cosmic Microwave Background Spectra, arXiv: 2106.07546 [astro-ph.CO]
Alberto Concellón, Ru-Qiang Lu, Kosuke Yoshinaga, Hsiu-Fu Hsu, and Timothy M. Swager (2021), Electric-Field-Induced Chirality in Columnar Liquid Crystals, J. Am. Chem. Soc. , doi: 10.1021/jacs.1c05268
Olivia Curtis, Tereasa G. Brainerd, Anthony Hernandez (2021), Cosmic Voids in Generated N-body Simulations, arXiv: 2106.04014 [astro-ph.CO]
Jiahua Deng and Qiang Cui (2021), Reverse Protonation of Buried Ion-Pairs in Staphylococcal Nuclease Mutants, J. Chem. Theory Comput., doi: 10.1021/acs.jctc.1c00355
Benjamin E. Goulet-Scott, Austin G. Garner, Robin Hopkins (2021), Genomic analyses overturn two long-standing homoploid hybrid speciation hypotheses, Evolution, doi: 10.1111/evo.14279
Mark T. Gregory, Yang Gao, Qiang Cui, and Wei Yang (2021), Multiple deprotonation paths of the nucleophile 3′-OH in the DNA synthesis reaction, PNAS, doi: 10.1073/pnas.2103990118
Harshil Kamdar, Charlie Conroy, Yuan-Sen Ting (2021), Stellar Streams in the Galactic Disk: Predicted Lifetimes and Their Utility in Measuring the Galactic Potential, arXiv: 2106.02050 [astro-ph.GA]
Qiaohao Liang et al (2021), Benchmarking the Performance of Bayesian Optimization Across Multiple Experimental Materials Science Domains, arXiv: 2106.01309 []
Anindita Maiti, Keegan Stoner, and James Halverson (2021), Symmetry-via-Duality: Invariant Neural Network Densities from Parameter-Space Correlators, arXiv: 2106.00694 [cs.LG]
Rahul Mazumder and Haoyue Wang (2021), Linear regression with partially mismatched data: local search with theoretical guarantees, arXiv: 2106.02175 [math.OC]
Mazzoni, Fernando (2021), Time Scales in Nucleation of Active Matter, University of Massachusetts, Lowell, Masters Thesis
Juan Moles, Tauana Junqueira Cunha, Sarah Lemer, David J Combosch, Gonzalo Giribet (2021), Tightening the girdle: phylotranscriptomics of Polyplacophora, Journal of Molluscan Studies, doi: 10.1093/mollus/eyab019
Oner, Ahmet (2021), Improving the Resilience of the Power Grid, Northeastern University Doctoral dissertation
George V. Papamokos, George Tziatzos, Dimitrios G. Papageorgiou, Spyros Georgatos, Efthimios Kaxiras, and Anastasia S. Politou (2021), Progressive Phosphorylation Modulates the Self-Association of a Variably Modified Histone H3 Peptide, Front. Mol. Biosci., doi: 10.3389/fmolb.2021.698182
Junjie Shi et al (2021), Formation of a Ti–Cu(111) single atom alloy: Structure and CO binding, The Journal of Chemical Physics, doi: 10.1063/5.0050800
Jonathan Vandermause et al (2021), Active learning of reactive Bayesian force fields: Application to heterogeneous hydrogen-platinum catalysis dynamics, ArXiv: 2106.01949 [cond-mat.mtrl-sci]
Wolfe, Pierre-François W. (2021), Enabling Secure Multi-Party Computation with FPGAS in the Datacenter, Boston University Doctoral Dissertation,
Yujing Yan, Charles C Davis, Dimitar Dimitrov, Zhiheng Wang, Carsten Rahbek, Michael Krabbe Borregaard (2021), Phytogeographic history of the Tea family inferred through high-resolution phylogeny and fossils, Systematic Biology, doi: 10.1093/sysbio/syab042
Linda Ye et al (2021), A flat band-induced correlated kagome metal, arXiv: 2106.10824 [cond-mat.mtrl-sci]
Ioana A. Zelko and Douglas P. Finkbeiner (2021), Impact of Dust on Spectral Distortion Measurements of the Cosmic Microwave Background, The Astrophysical Journal, doi: 10.3847/1538-4357/abfa12
Xi Zhang et al (2021), Gate-tunable Veselago Interference in a Bipolar Graphene Microcavity, arXiv: 2106.09651
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact


MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
All Research Projects

Collaborative projects

ALL Collaborative PROJECTS

Outreach & Education Projects

See ALL Scholarships
100 Bigelow Street, Holyoke, MA 01040