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July Publications

August 5, 2020

Below is a selection of papers that appeared in May 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT's Engaging Cluster all of which are housed at the MGHPCC.

Mark Baum Robin Wordsworth (2020), Groundwater Flow to Gale Crater in an Episodically Warm Climate, Journal of Geophysical Research Planets, doi: 10.1029/2020JE006397
M.-A. C. Bind, and D. B. Rubin (2020), When possible, report a Fisher-exact P value and display its underlying null randomization distribution, PNAS, doi: 10.1073/pnas.1915454117
Zhao Bowen, Takahashi Jun, Sandvik Anders W., (2020), Tunable deconfined quantum criticality and interplay of different valence-bond solid phases, Chinese Physics B, 2020, 29(5): 057506, http://cpb.iphy.ac.cn/article/2020/2030/cpb_29_5_057506.html
Lior M. Burko and Gaurav Khanna (2020), Climbing up the memory staircase: Equatorial zoom-whirl orbits, arXiv: 2007.1254 [gr-qc]
Anderson S. Chaves, Alex Antonelli, Daniel T. Larson, and Efthimios Kaxiras (2020), Boosting the efficiency of ab initio electron-phonon coupling calculations through dual interpolation, arXiv: 2006.16954 [cond-mat.mtr-sci]
Ethan Evans (2020), Conformational Landscape Reduction of a Dynamic 29-Residue Peptide by a Perfluoroaromatic Small Molecule, ChemRXiv, doi: 10.25434/chemrxiv.12679226.v1
Zhaoqianqi Feng, Huaimin Wang, Fengbin Wang, Younghoon Oh, Cristina Berciu, Qiang Cui, Edward H. Egelman, BingXu (2020), Artificial Intracellular Filaments, Cell Reports Physical Science, doi: 10.1016/j.xcrp.2020.100085
Gregory M. Green, Hans-Walter Rix, Leon Tschesche, Douglas Finkbeiner, Catherine Zucker, Edward F. Schlafly, Jan Rybizki, Morgan Fouesneau, Rene Andrae and Joshua Speagle (2020), Data-Driven Stellar Models, arXiv: 2006.16258 [astro-ph.GA]
Shingo Ito and Qiang Cui (2020), Multi-level free energy simulation with a staged transformation approach, The Journal of Chemical Physics, doi: 10.1063/5.0012494
Harshil Kamdar, Charlie Conroy, Yuan-Sen Ting, Kareem El-Brady (2020), Spatial and Kinematic Clustering of Stars in the Galactic Disk, arXiv: 2007.10990 [astro-ph.GA]
Weijun Luo, Akinola D. Oyedele, Yiyi Gu, Tianshu Li, Xingzhi Wang, Amanda V. Haglund, David Mandrus, Alexander A. Puretzky, Kai Xiao, Liangbo Liang, Xi Ling (2020), Anisotropic Phonon Response of Few‐Layer PdSe2 under Uniaxial Strain, Advanced Functional Materials, doi: 10.1002/adfm.202003215
Mahdieh Yazdani, Guohui Zhang, Zhiguang Jia, Jingyi Shi, Jianmin Cui Is a corresponding author, Jianhan Chen (2020), Aromatic interactions with membrane modulate human BK channel activation, eLife 2020;9:e55571, doi: 10.7554/eLife.55571
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Asteroid Data Mining
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
Building for Floods
Better Pathogen Targeting
Tracking Environmental Health Risks
AI for Cancer Diagnosis
Microplastic-Free by Design
Supporting Data-intensive Social Science
Sailing the Symbiosis Seascape
Wrangle Range Modeling
Shining a Light on Dark Matter
Grid Responsive Data Centers
Multifunctional 3D-Printed Materials
AI Pareidolia
Computing Hidden Health Threats from Heat
Staving off the Banana Apocalypse
CRISPR Mice, Smarter Science
AI That Speaks Human About Health
A Safer Way to See Inside Cells
How Monkeys - and Machines - See in 3D
FlowER: AI for Predicting Chemical Reactions
Bone Ratios and Big Data
Supercomputers Reveal Ancient Atmospheric Battle
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