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February 2024 Publications

February 14, 2024

Imaging the ocean? Inverse indentation problems? Digital-analog quantum learning on Rydberg atom arrays? A selection of recent publications featuring research using the MGHPCC.

Akyürek, Afra Feyza et al (2024), Deductive Closure Training of Language Models for Coherence, Accuracy, and Updatability, arXiv: 2401.08574, [cs.CL] 

Berman, E.M. et al (2024), Efficient PSF Modeling with ShOpt.jl: A PSF Benchmarking Study with JWST NIRCam Imaging, arXiv: 2401.11625 [astro-ph.IM] 

Brandão, Lilliana and Christian Reece (2024), Non-Steady State Validation of Kinetic Models for Ethylene Epoxidation over Silver Catalysts, ChemRxiv, doi: 10.26434/chemrxiv-2024-1f185

Curtis, Olivia et al (2024), Properties of Voids and Void Galaxies in the TNG300 Simulation, arXiv: 2401.02322 [astro-ph.GA] 

DeBossu, Charlotte A., “An Evaluation of Object Detection Algorithms Applied to Oceanographic Midwater Imagery” (2023), URI Master’s Thesis

De Luca, Andrea et al (2024), Universality classes for purification in nonunitary quantum processes, arXiv: 2312.17744 [cond-mat.stat-mech] 

D’Emidio, Jonathan and Anders W. Sandvik (2024), Entanglement entropy and deconfined criticality: emergent SO(5) symmetry and proper lattice bipartition, arXiv: 2401.14396 [cond-mat.str-el] 

Farnsworth, Amanda and Emre Gencer (2024), The elephant in the room: embodied emissions in
our power sector, via ResearchSquare, doi: 10.21203/rs.3.rs-3745769 

Gemmell, Patrick (2024), Linking phenotypic and genotypic variation: a relaxed phylogenetic approach using the probabilistic programming language Stan, bioRXiv, doi: 10.1101/2024.01.23.576950

Haspel, N et al (2024), Allosteric Activation of RhoA Complexed with p115-RhoGEF Deciphered by Conformational Dynamics, J. Chem. Inf. Model., doi: 10.1021/acs.jcim.3c01412 

Jiao, Q et al (2024), A machine learning perspective on the inverse indentation problem: uniqueness, surrogate modeling, and learning elasto-plastic properties from pile-up, Journal of the Mechanics and Physics of Solids, doi: 10.1016/j.jmps.2024.105557

Kothalawala, Veenavee Nipunika et al (2024), Compton scattering study of strong orbital delocalization in a LiNiO2 cathode, Physical Review B, doi: 10.1103/PhysRevB.109.035139 

Landen Gozashti & Hopi E. Hoekstra (2024), Accounting for diverse transposable element landscapes is key to developing and evaluating accurate de novo annotation strategies, Genome Biology, doi: 10.1186/s13059-023-03118-1 

Leonard, A. et al (2024), Varying primordial state fractions in exo- and endothermic SIDM simulations of Milky Way-mass haloes, arXiv: 2401.13727 [astro-ph.CO] 

Lopez, L and Wesley Harris (2024), Effect of Wall Temperature on Turbulent Shock Wave-Boundary Layer Interaction (SBLI) at Mach 8.2, AIAA SCITECH 2024 Forum, 8-12 January 2024, Orlando, FL, doi: 10.2514/6.2024-2382

Lu, J.Z. et al (2024), Digital-analog quantum learning on Rydberg atom arrays, arXiv: 2401.02940 [quant-ph]

Luo, Shuang et al (2024), Water Electric Field Induced Modulation of the Wetting of Hexagonal Boron Nitride: Insights from Multiscale Modeling of Many-Body Polarization, ACS Nano, doi: 10.1021/acsnano.3c09811

Mangal, Deepak et al (2024), Predicting yielding in attractive colloidal gels, Physical review E, doi: 10.1103/PhysRevE.109.014602

Markiewicz R.S. and A. Bansil (2024), Theory of cuprate pseudogap as antiferromagnetic order with charged domain walls, Physical Review B, doi: 10.1103/PhysRevB.109.045116

Miyamoto, A et al (2024), Identifying Procedure-Conforming Behaviors in Trajectory Data for Higher-Fidelity Operational Safety Analysis, AIAA SCITECH 2024 Forum, 8-12 January 2024, Orlando, FL, doi: 10.2514/6.2024-0790

Pathreeker, S et al (2024), Hexagonal Boron Nitride Modulates Crystallinity and Charge Mobility in Poly(ethylene oxide)–NaNO3 Electrolytes, J. Phys. Chem. C, doi: 10.1021/acs.jpcc.3c06455

Paul, S et al (2024), The molecular basis for the increased stability of the FUS-LC fibril at the anionic membrane- and air-water interfaces, bioRxiv, doi: 10.1101/2024.01.15.575617

Reuther, Albert et al (20240, Interactive and Urgent HPC: Challenges and Opportunities, arXiv: 2401.14550[cs.DC] 

Rigon, G et al (2024), Development of a platform for experimental and computational studies of magnetic and radiative effects on astrophysically-relevant jets at OMEGA, arXiv:2401.10779 [physics.plasm-ph] 

Rodriguez-Fernandez, V et al (2024), Towards a Machine Learning-Based Approach to Predict Space Object Density Distributions, AIAA SCITECH 2024 Forum, 8-12 January 2024, Orlando, FL, doi: 10.2514/6.2024-1673 

Rocks, Jason P. et al (2024), Topological characterization of the continuum of allosteric response, arXiv: 2401.13861 [cond-mat.soft] 

Salvalaglio, Marco et al (2024), Persistent homology and topological statistics of hyperuniform point clouds, arXiv: 2401.13123 [cond-mat.stat-mech] 

Shi, Z (2024), Facilitating decision-making in large distributed systems with selfish and adversarial actors, BU Doctoral Dissertation

Shubitigze, Tormike et al (2024), Localization landscape of optical waves in multifractal photonic membranes, arXiv: 2401.15244 [physics.optics] 

Wang, Tongkun et al (2024), Removing Fluoride from Double Four-Membered Rings Yielding Defect-Free Zeolites under Mild Conditions Using Ozone, Chem. Mater., doi: 10.1021/acs.chemmater.3c02695

Ye, L. et al (2024), Hopping frustration-induced flat band and strange metallicity in a kagome metal, Nature Physics, doi: 10.1038/s41567-023-02360-5

Zhang, Y. et al (2024), Data center and load aggregator coordination towards electricity demand response, Sustainable Computing: Informatics and Systems, doi: 10.1016/j.suscom.2024.100957

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
The Rhode Island Coastal Hazards Analysis, Modeling, and Prediction System
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute – Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer – Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
QuEra at the MGHPCC
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) – a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Measuring Neutrino Mass
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Fuzzing the Linux Kernel
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer’s Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Avoiding Smash Hits
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
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