April 2024 Publications

April 3, 2024

Galaxy luminosity? Chemoselective aerobic oxidation? Adaptive multiphoton microscopy acquisition? A selection of recent publications featuring research using the MGHPCC.

Aderinto, S.O. et al (2024), Iridium(III)-based minor groove binding complexes as DNA photocleavage agents, Dalton Transactions, doi: 10.1039/d4dt00171k 

Aichelman, Hannah E. et al (2024), Symbiosis modulates gene expression of symbionts, but not coral hosts, under thermal challenge, Molecular Ecology, doi: 10.1111/mec.17318 

Alqassar, J.D. (2024), A draft webbing clothes moth (Tineola bisselliella) genome sheds light on chromosomal evolution and keratinophagy, Boston University Masters Dissertation 

Arranz, G. et al (2024), Building-block flow model for computational fluids, arXiv: 2403.09000 [physics.flu-dyn] 

Bryan, J et al (2024), The intermittently-resonant coevolution of migrating planets and their pulsating star, arXiv:2403.08014v1 [astro-ph.EP]  

Cai, Grace et al (2024), Matrix confinement modulates 3D spheroid sorting and burst-like collective migration, Acta Biomaterialia, doi: 10.1016/j.actbio.2024.03.007 

Chin, Samuel J. K. et al (2024), Learning to Deliver: a Foundation Model for the Montreal Capacitated Vehicle Routing Problem, arXiv: 2403.00026v1 [cs.LG]  

Deng, Jiahua and Qiang Cui (2024), Efficient Sampling of Cavity Hydration in Proteins with Nonequilibrium Grand Canonical Monte Carlo and Polarizable Force Fields, J. Chem. Theory Comput., doi: 10.1021/acs.jctc.4c00013 

Dong, Zhihuan et al (2024), Stability of Anomalous Hall Crystals in multilayer rhombohedral graphene, arXiv:2403.07873v1 [cond-mat.str-el]  

Flores, Jonathan A. et al (2024), Mapping proglacial headwater streams in High Mountain Asia using PlanetScope imagery, Remote Sensing of Environment, doi: 10.1016/j.rse.2024.114124

Howard, N.T. et al (2024), Simultaneous reproduction of experimental profiles, fluxes, transport coefficients, and turbulence characteristics via nonlinear gyrokinetic profile predictions in a DIII-D ITER similar shape plasma featured, Physics of Plasmas, doi: 10.1063/5.0175792 

Kay, J. et al (2024), Align and Distill: Unifying and Improving Domain Adaptive Object Detection, arXiv:2403.12029 [cs.CV]  

Khan, Omeir et al (2024), Expanding FTMap for Fragment-Based Identification of Pharmacophore Regions in Ligand Binding Sites, J. Chem. Inf. Model., doi: 10.1021/acs.jcim.3c01969 

Kitt, M.I. et al (2024), Chemoselective Aerobic Oxidation of Alcohols Utilizing a Vanadium(V) Catalyst, ACS Catalysis, doi: 10.1021/acscatal.3c05638

Lai, Rui et al (2024), Flexibility of Binding Site is Essential to the Ca2+ Selectivity in EF-Hand Calcium-Binding Proteins, J. Am. Chem. Soc., doi: 10.1021/jacs.3c13981 

Mishra-Sharma, S et al (2024), PAPERCLIP: Associating Astronomical Observations and Natural Language with Multi-Modal Models, arXiv: 2403.08851 [astro-ph.IM] 

Petrov, Artem et al (2024), Simple Calibration of Block Copolymer Melt Models, arXiv:2402.18760 [cond-mat.soft]  

Rawlins, M. A. and Karmalkar, A. V. (2024), Regime shifts in Arctic terrestrial hydrology manifested from impacts of climate warming, The Cryosphere, doi: 10.5194/tc-18-1033-2024 

Rodriguez-Fernandez, P et al (2024), Core performance predictions in projected SPARC first-campaign plasmas with nonlinear CGYRO, arXiv:2403.15633 [physics.plasm-ph] 

Sabti, Nashwan et al (2024), GALLUMI: A Galaxy Luminosity Function Pipeline for Cosmology and Astrophysics, arXiv: 2110.13168 [astro-ph.CO]  

Schrecengost, Anna et al (2024), Divergent marine anaerobic ciliates harbor closely related Methanocorpusculum endosymbionts, bioRxiv, doi: 10.1101/2024.03.12.584670

Sonnert, N.D. et al (2024), A host–microbiota interactome reveals extensive transkingdom connectivity, Nature, doi: 10.1038/s41586-024-07162-0 

Yang, Qianwan et al (2024), Wide-Field, High-Resolution Reconstruction in Computational Multi-Aperture Miniscope Using a Fourier Neural Network, arXiv: 2403.06439 [physics.optics]  

Ye, Cassandra Tong  et al (2024), Leveraging uncertainty quantification in adaptive multiphoton microscopy acquisition, Proc. SPIE Computational Optical Imaging and Artificial Intelligence in Biomedical Sciences, doi: 10.1117/12.2692749 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact


MGHPCC Publications

Research projects

Dusty With a Chance of Star Formation
Checking the Medicine Cabinet to Interrupt COVID-19 at the Molecular Level
Not Too Hot, Not Too Cold But Still, Is It Just Right?​
Smashing Discoveries​
Microbiome Pattern Hunting
Modeling the Air we Breathe
Exploring Phytoplankton Diversity
The Computer Will See You Now
Computing the Toll of Trapped Diamondback Terrapins
Edging Towards a Greener Future
Physics-driven Drug Discovery
Modeling Plasma-Surface Interactions
Sensing Subduction Zones
Neural Networks & Earthquakes
Small Stars, Smaller Planets, Big Computing
Data Visualization using Climate Reanalyzer
Getting to Grips with Glassy Materials
Modeling Molecular Engines
Forest Mapping: When the Budworms come to Dinner
Exploring Thermoelectric Behavior at the Nanoscale
The Trickiness of Talking to Computers
A Genomic Take on Geobiology
From Grass to Gas
Teaching Computers to Identify Odors
From Games to Brains
The Trouble with Turbulence
A New Twist
A Little Bit of This… A Little Bit of That..
Looking Like an Alien!
Locking Up Computing
Modeling Supernovae
Sound Solution
Lessons in a Virtual Test Tube​
Crack Computing
Automated Real-time Medical Imaging Analysis
Towards a Smarter Greener Grid
Heading Off Head Blight
Organic Light-Harvesting Antennae
Art and AI
Excited by Photons
Tapping into an Ocean of Data
Computing Global Change
Star Power
Engineering the Human Microbiome
Computing Social Capital
Computers Diagnosing Disease
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Collaborative projects

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Outreach & Education Projects

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