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A Safer Way to See Inside Cells

Image credit: Matthew Modoono/Northeastern University
Rouhaniford Lab researchers have created a safe click chemistry tool that tracks biomolecules in living cells without toxicity.

At Northeastern University’s Rouhanifard Lab, researchers are uncovering the hidden layers of cellular regulation by combining epitranscriptomics with cutting-edge chemical biology. Their goal: to understand how molecular modifications influence health and disease.

In a recent breakthrough, the team introduced InCu-Click, a novel reagent that makes click chemistry safe for use in living cells. Click chemistry—especially the copper-catalyzed azide-alkyne cycloaddition (CuAAC)—is a powerful tool for labeling biomolecules. However, its use in live cells has been limited due to copper’s toxicity. InCu-Click overcomes this challenge by using a copper-chelating ligand that neutralizes harmful effects while still enabling efficient chemical reactions.

This innovation allows scientists to track biomolecules in real time inside living cells without disrupting their function—a major advancement for drug discovery, diagnostics, and gene expression research. With its high precision, InCu-Click enables selective labeling of molecular targets, opening new doors for studying RNA behavior and disease mechanisms.

To develop and optimize InCu-Click, Assistant Professor Sara Rouhanifard’s team leveraged Northeastern’s advanced research computing resources, including the Discovery Cluster, to model chemical interactions and fine-tune ligand performance. The team is now preparing the reagent for commercialization, aiming to make live-cell RNA tracking widely accessible for clinical and pharmaceutical applications.

 

Sara Rouhanifard
Associate Professor of Bioengineering

Research projects

A Future of Unmanned Aerial Vehicles
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Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Investigating Mantle Flow Through Analyses of Earthquake Wave Propagation
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Asteroid Data Mining
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
Building for Floods
Better Pathogen Targeting
Tracking Environmental Health Risks
AI for Cancer Diagnosis
Microplastic-Free by Design
Supporting Data-intensive Social Science
Sailing the Symbiosis Seascape
Wrangle Range Modeling
Shining a Light on Dark Matter
Grid Responsive Data Centers
Multifunctional 3D-Printed Materials
AI Pareidolia
Computing Hidden Health Threats from Heat
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CRISPR Mice, Smarter Science
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How Monkeys - and Machines - See in 3D
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