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March 2025 Publications

April 3, 2025

Tunable superconductivity? Hydrogen deployment in net-zero energy systems? Environmental drivers of spatial variation in tropical forest canopy height? A selection of recent publications featuring research using the MGHPCC.

Atherton, Kathryn et al (2025), Dysbiosis in the urban tree microbiome, via ResearchSquare, doi: 10.21203/rs.3.rs-5939048/v1 

Bacik, Karol A. et al (2025), Order–disorder transition in multidirectional crowds, PNAS, doi: 10.1073/pnas.2420697122 

Baek, S.G. et al (2025), Modeling study of synergistic effects between lower hybrid and electron cyclotron current drive on EAST, Nucl. Fusion, doi: 10.1088/1741-4326/adc287

Byju, Sandra (2025), Quantifying the Dynamics and Functional Relationships of Collective Processes in a Biomolecular Assembly, Northeastern University ProQuest Dissertations & Theses,  2025, 31843008

Chakraborty, Srirupa et al (2025), Allosteric Control and Glycan Shielding Adaptations in the SARS-CoV-2 Spike from Early to Peak Virulence, via biorXiv, doi: 10.1101/2025.03.11.642723 

Dabringhaus, P. et al (2025), Dicationic Boron Derivatives of Schlenk’s and Thiele’s Hydrocarbon, Journal of the American Chemical Society, doi: 10.1021/jacs.5c00236

Eiskowitz, Skylar et al (2025), Revenue Management to Maximize Global Network Revenue for a Satellite Communication Operator, Intl. Journal of Satellite Communications and Networking, doi: 10.1002/sat.1562

Faggioli, Guglielmo et al (2025), Testing eccentric corrections to the radiation-reaction force in the test-mass limit of effective-one-body models, Physical Review D, doi: 10.1103/PhysRevD.111.044036

Hendricks, Lauren et al (2025), Fontimonas thermophila Alkane Monooxygenase (FtAlkB) Is an Alkyl Fluoride Dehalogenase, Journal of the American Chemical Society, doi: 10.1021/jacs.5c00386

Hossain, M.S., Zhang, Q., Graf, D. et al (2025), Tunable superconductivity coexisting with the anomalous Hall effect in a transition metal dichalcogenide, Nat Commun, doi: 10.1038/s41467-025-56919-2 

Keys AM, Kastner DW, Kiessling LL, Kulik HJ (2025), CH-pi Interactions Confer Orientational Flexibility in Protein-Carbohydrate Binding Sites, ChemRxiv, doi: 10.26434/chemrxiv-2025-5n9m1 

Law, Jun Wen et al (2025), Role of Technology Flexibility and Grid Coupling on Hydrogen Deployment in Net-Zero Energy Systems, Environmental Science and Technology, doi: 10.1021/acs.est.4c12166 

Li, H., Bao, S., Farzad, N. et al (2025), Spatially resolved genome-wide joint profiling of epigenome and transcriptome with spatial-ATAC-RNA-seq and spatial-CUT&Tag-RNA-seq, Nat Protoc, doi: 10.1038/s41596-025-01145-9

Liu, Shaoqing et al (2025), Environmental drivers of spatial variation in tropical forest canopy height: Insights from NASA’s GEDI spaceborne LiDAR, PNAS, doi: 10.1073/pnas.240175512

Mani, Natesan et al (2025), Cleaved vs. Uncleaved: How Furin Cleavage Reshapes the Conformational Landscape of SARS-CoV-2 Spike, via bioRxiv, doi: 10.1101/2025.03.12.642945

Pierce M.W. et al (2025), Features of double-frequency triad interactions in the nonlinear response to a moving load on a floating ice sheet, Journal of Fluid Mechanics, doi: 10.1017/jfm.2025.89

Ramachandran, Balajee et al (2025), Velcro-binding by cardiac troponin-I traps tropomyosin on actin in a low-energy relaxed state, Biochemical and Biophysical Research Communications, doi: 10.1016/j.bbrc.2025.151595 

Routh, Prahlad K. et al (2025), Unraveling the Kinetics of Hydride Formation and Decomposition at Pd–Au Bimetallic Interfaces: A Combined Spectroscopic and Computational Study, J. Am. Chem. Soc, doi: 10.1021/jacs.5c00842 

Tong Ye, Cassandra et al (2025), Learned, uncertainty-driven adaptive acquisition for photon-efficient scanning microscopy, Opt. Express, doi: 10.1364/OE.542640

Wang, Nathan B, et al (2025), Compact transcription factor cassettes generate functional, engraftable motor neurons by direct conversion, Cell Systems, doi: 10.1016/j.cels.2025.101206 

Yook, S., Solomon, S., & Wang, X. (2025), The impact of 2022 hunga tonga‐hunga ha'apai (hunga) eruption on stratospheric circulation and climate, Journal of Geophysical Research:
Atmospheres, doi: 10.1029/2024JD042943 

Yu, Hyejin et al (2025), Molecular Level Understanding of Polyethylene Terephthalate (PET) Depolymerization in Base/Alcohol Hybrid Systems, ACS Appl. Mater. Interfaces, doi: 10.1021/acsami.4c20887 

Yu, Sunmoon et al (2025), Reactivating Molecular Cobalt Catalysts for Electrochemical CO2 Conversion to Methanol, J. Am. Chem. Soc., doi: 10.1021/jacs.5c02411

​Jiang, Y. and H. Zhang (2025), Empowering genome-wide association studies via a visualizable test based on the regional association score, PNAS, doi: 10.1073/pnas.2419721122 

Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Asteroid Data Mining
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
Building for Floods
Better Pathogen Targeting
Tracking Environmental Health Risks
AI for Cancer Diagnosis
Microplastic-Free by Design
Supporting Data-intensive Social Science
Sailing the Symbiosis Seascape
Wrangle Range Modeling
Shining a Light on Dark Matter
Grid Responsive Data Centers
Multifunctional 3D-Printed Materials
AI Pareidolia
Computing Hidden Health Threats from Heat
Staving off the Banana Apocalypse
CRISPR Mice, Smarter Science
Naval and Ocean Renewable Energy Hydrodynamics
AI That Speaks Human About Health
A Safer Way to See Inside Cells
How Monkeys - and Machines - See in 3D
FlowER: AI for Predicting Chemical Reactions
Bone Ratios and Big Data
Supercomputers Reveal Ancient Atmospheric Battle
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