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June Publications

July 1, 2020

Below is a selection of papers that appeared in May 2020  reporting the results of research using the Massachusetts Green High Performance Computing Center (MGHPCC), or acknowledging the use of Harvard’s Odyssey or Cannon Clusters, Northeastern’s Discovery Cluster, the Boston University Shared Computing Cluster and MIT's Engaging Cluster all of which are housed at the MGHPCC.

Simon Axelrod and Rafael Gómez-Bombarelli (2020), GEOM: Energy-annotated molecular conformations for property prediction and molecular generation, arXiv: 2006.05531 [physics.comp-ph]
Cedric Flamant, Pavlos Protopapas, David Sondak (2020), Solving Differential Equations Using Neural Network Solution Bundles, arXiv: 2006.14372 [cs.LG]
Daniel M. Gross, Stephanie D. Preston (2020), Darwin and the Situation of Emotion Research, Emotion Review, doi: 10.1177/1754073920930802
Byungsu Kwon, Taraknath Mandal, Matthew R. Elkins, Younghoon Oh, Qiang Cui, Mei Hong (2020), Cholesterol Interaction with the Trimeric HIV Fusion Protein gp41 in Lipid Bilayers Investigated by Solid-State NMR Spectroscopy and Molecular Dynamics Simulations, Journal of Molecular Biology, doi: 10.1016/j.jmb.2020.06.017
Reza Pourhaghighi, et al (2020), BraInMap Elucidates the Macromolecular Connectivity Landscape of Mammalian Brain, Cell Systems, doi: 10.1016/j.cels.2020.03.003
Mohammad Mahdi Salary and Hossein Mosallaei (2020), Tunable All-dielectric Metasurfaces for Phase-only Modulation of Transmitted Light based on Quasi-bound States in the Continuum, ACS Photonics, doi: 10.1021/acsphotonics.0c00554
F. Sciortino, N.T. Howard, E.S. Marmar, T. Odstrcil, N.M. Cao, R. Dux, Y. Marzouk, L.M. Milanese, M.L. Reinke, J.E. Rice, P. Rodriguez-Fernandez (2020), Inference of Experimental Radial Impurity Transport on Alcator C-Mod: Bayesian Parameter Estimation and Model Selection, arXiv: 2006.06789 [physics.plasm.ph]
Mohammad Mahdi Tavakoli, Giovanni Azzellino, Marek Hempel, Ang‐Yu Lu, Francisco J. Martin‐Martinez, Jiayuan Zhao, Jingjie Yeo, Tomas Palacios, Markus J. Buehler, Jing Kong (2020), Synergistic Roll‐to‐Roll Transfer and Doping of CVD‐Graphene Using Parylene for Ambient‐Stable and Ultra‐Lightweight Photovoltaics, Advanced Functional Materials, doi: 10.1002/adfm.202001924
X. Wu, D. Braun, J. Schwartz, M. A. Kioumourtzoglou, F. Dominici (2020), Evaluating the impact of long-term exposure to fine particulate matter on mortality among the elderly, Science Advances, doi: 10.1126/sciadv.aba5692
Rakesh K. Yadav and Jeremy Bloxham (2020), Deep rotating convection generates the polar hexagon on Saturn, PNAS, doi: 10.1073/pnas.2000317117
Ziyan Zhu, Stephen Carr, Daniel Massatt, Mitchell Luskin, and Efthimios Kaxiras (2020), Twisted Trilayer Graphene: a Precisely Tunable Platform for Correlated Electrons, arXiv:2006.00399
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Asteroid Data Mining
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
Building for Floods
Better Pathogen Targeting
Tracking Environmental Health Risks
AI for Cancer Diagnosis
Microplastic-Free by Design
Supporting Data-intensive Social Science
Sailing the Symbiosis Seascape
Wrangle Range Modeling
Shining a Light on Dark Matter
Grid Responsive Data Centers
Multifunctional 3D-Printed Materials
AI Pareidolia
Computing Hidden Health Threats from Heat
Staving off the Banana Apocalypse
CRISPR Mice, Smarter Science
Naval and Ocean Renewable Energy Hydrodynamics
AI That Speaks Human About Health
A Safer Way to See Inside Cells
How Monkeys - and Machines - See in 3D
FlowER: AI for Predicting Chemical Reactions
Bone Ratios and Big Data
Supercomputers Reveal Ancient Atmospheric Battle
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