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February Publications

March 2, 2021

Deep time weevil evolution? Using machine learning to derive historic  atmospheric particulate matter distributions? Tracking the role of BDNF in brain structure and function? Designing batteries better suited to fluctuating renewables? This month's selection of publications featuring research using the MGHPCC.

Carrasco Pro, Sebastian et al (2021), Prediction of genome-wide effects of single nucleotide variants on transcription factor binding, Scientific Report, doi: 10.1038/s41598-020-74793-4
Carrasco Pro, Sebastian (2020), Transcriptional Regulation Landscape in Health and Disease, Boston University Doctoral Dissertation, ProQuest: 28089766
M. Celeste Artale et al (2021), The large-scale distribution of highly ionized metals in IllustrisTNG, arXiv:2102.01092 [astro-ph.GA]
Maria Lourdes Chamorro, Bruno A.S. de Medeiros, Brian D. Farrell (2021), First phylogenetic analysis of Dryophthorinae (Coleoptera, Curculionidae) based on structural alignment of ribosomal DNA reveals Cenozoic diversification, Ecology and Evolution, doi: 10.1002/ece3.7131
Jonathan Cohen et al (2021), Economic controls co-design of hybrid microgrids with tidal/PV generationand lithium ion/flow battery storage, arXiv:2102.05197
Haiying Gao and Cong Li (2021), Lithospheric Formation and Evolution of Eastern North American Continent, Geophysical Research Letters, doi: 10.1029/2020GL091074
William Gao, Thomas A. Jones and Elena Rivas (2021), Discovery of 17 conserved structural RNAs in fungi, biorXiv, doi: 10.1101/2021.02.01.429235
C. M. Golja, L. W. Chew, J. A. Dykema, D. W. Keith (2021), Aerosol Dynamics in the Near Field of the SCoPEx Stratospheric Balloon Experiment, Journal of Geophysical Research - Atmospheres, doi: 10.1029/2020JD033438
Jing Li et al (2021), Estimation of ambient PM2.5 in Iraq and Kuwait from 2001 to 2018 using machine learning and remote sensing, Environment International, doi: 10.1016/j.envint.2021.106445
Shuo Li et al (2021), The genetics of circulating BDNF: towards understanding the role of BDNF in brainstructure and function in middle and old ages, Brain Communications, doi: 10.1093/braincomms/fcaa176
Pavitra Muralidhar and Carl Veller (2021), Dominance shifts increase the likelihood of soft selective sweeps, bioRxiv, doi: 10.1101/2021.02.22.432386
Vasaki Ponnusamy et al (2021), Green Energy in Data Centers Using Internet of Things, Role of IoT in Green Energy Systems, doi: 10.4018/978-1-7998-6709-8.ch010
Vista Sohrab et al (2021), TEfinder: A Bioinformatics Pipeline for Detecting New Transposable Element Insertion Events in Next-Generation Sequencing Data, Genes, doi: 10.3390/genes12020224
Do you have news about research using computing resources at the MGHPCC? If you have an interesting project that you want to tell people about or a paper you would like listed, contact 

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MGHPCC Publications

Research projects

A Future of Unmanned Aerial Vehicles
Yale Budget Lab
Volcanic Eruptions Impact on Stratospheric Chemistry & Ozone
Towards a Whole Brain Cellular Atlas
Tornado Path Detection
The Kempner Institute - Unlocking Intelligence
The Institute for Experiential AI
Taming the Energy Appetite of AI Models
Surface Behavior
Studying Highly Efficient Biological Solar Energy Systems
Software for Unreliable Quantum Computers
Simulating Large Biomolecular Assemblies
SEQer - Sequence Evaluation in Realtime
Revolutionizing Materials Design with Computational Modeling
Remote Sensing of Earth Systems
Quantum Computing in Renewable Energy Development
Pulling Back the Quantum Curtain on ‘Weyl Fermions’
New Insights on Binary Black Holes
NeuraChip
Network Attached FPGAs in the OCT
Monte Carlo eXtreme (MCX) - a Physically-Accurate Photon Simulator
Modeling Hydrogels and Elastomers
Modeling Breast Cancer Spread
Impact of Marine Heatwaves on Coral Diversity
IceCube: Hunting Neutrinos
Genome Forecasting
Global Consequences of Warming-Induced Arctic River Changes
Exact Gravitational Lensing by Rotating Black Holes
Evolution of Viral Infectious Disease
Evaluating Health Benefits of Stricter US Air Quality Standards
Ephemeral Stream Water Contributions to US Drainage Networks
Energy Transport and Ultrafast Spectroscopy Lab
Electron Heating in Kinetic-Alfvén-Wave Turbulence
Discovering Evolution’s Master Switches
Dexterous Robotic Hands
Developing Advanced Materials for a Sustainable Energy Future
Detecting Protein Concentrations in Assays
Denser Environments Cultivate Larger Galaxies
Deciphering Alzheimer's Disease
Dancing Frog Genomes
Cyber-Physical Communication Network Security
Asteroid Data Mining
Analyzing the Gut Microbiome
Adaptive Deep Learning Systems Towards Edge Intelligence
Accelerating Rendering Power
ACAS X: A Family of Next-Generation Collision Avoidance Systems
Neurocognition at the Wu Tsai Institute, Yale
Computational Modeling of Biological Systems
Computational Molecular Ecology
Social Capital and Economic Mobility
Building for Floods
Better Pathogen Targeting
Tracking Environmental Health Risks
AI for Cancer Diagnosis
Microplastic-Free by Design
Supporting Data-intensive Social Science
Sailing the Symbiosis Seascape
Wrangle Range Modeling
Shining a Light on Dark Matter
Grid Responsive Data Centers
Multifunctional 3D-Printed Materials
AI Pareidolia
Computing Hidden Health Threats from Heat
Staving off the Banana Apocalypse
CRISPR Mice, Smarter Science
AI That Speaks Human About Health
A Safer Way to See Inside Cells
How Monkeys - and Machines - See in 3D
FlowER: AI for Predicting Chemical Reactions
Bone Ratios and Big Data
Supercomputers Reveal Ancient Atmospheric Battle
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